Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ID1-201ENST00000376105 1233 ntBASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 AC079140.4-201ENST00000507448 529 ntBASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 AC007613.1-201ENST00000572811 2597 ntBASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ZNF540Q8NDQ6 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
ZNF540Q8NDQ6 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 AC080038.1-201ENST00000611274 1154 ntBASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ZNF540Q8NDQ6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 BID-214ENST00000617586 542 ntTSL 5 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ZNF540Q8NDQ6 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms