Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 AL596257.1-201ENST00000641463 2694 ntBASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CLRN3Q8NCR9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 HYI-210ENST00000486909 905 ntTSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 MIR6765-201ENST00000614092 87 ntBASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.72■□□□□ 0.11
CLRN3Q8NCR9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.71■□□□□ 0.11
CLRN3Q8NCR9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.71■□□□□ 0.1
CLRN3Q8NCR9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN3Q8NCR9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms