Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.24■□□□□ 0.83
RTL3Q8N8U3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.24■□□□□ 0.83
RTL3Q8N8U3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 AP006587.1-201ENST00000534129 1502 ntBASIC20.23■□□□□ 0.83
RTL3Q8N8U3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.23■□□□□ 0.83
RTL3Q8N8U3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 PRORSD1P-201ENST00000295112 541 ntBASIC20.22■□□□□ 0.83
RTL3Q8N8U3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 AL023875.1-201ENST00000640777 796 ntBASIC20.22■□□□□ 0.83
RTL3Q8N8U3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.22■□□□□ 0.83
RTL3Q8N8U3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 AC239809.2-201ENST00000415381 517 ntBASIC20.21■□□□□ 0.83
RTL3Q8N8U3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RTL3Q8N8U3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTL3Q8N8U3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms