Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 AC018553.1-201ENST00000616682 1458 ntBASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 AC004951.3-201ENST00000418645 1148 ntBASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 AC009947.2-201ENST00000444014 672 ntBASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 COX11P1-201ENST00000489116 835 ntBASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC44A3Q8N4M1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 SLC25A1P2-201ENST00000430693 912 ntBASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 MFAP1P1-201ENST00000442257 1255 ntBASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 AC005229.4-201ENST00000610085 2198 ntBASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC44A3Q8N4M1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC096733.2-201ENST00000609937 1394 ntBASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 EP400NL-214ENST00000641289 2402 ntBASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC007663.1-201ENST00000438948 1240 ntBASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC092647.4-201ENST00000457211 535 ntBASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC010653.2-201ENST00000623505 997 ntBASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SLC44A3Q8N4M1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 KRT16P6-202ENST00000425692 1426 ntBASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 FAM207BP-201ENST00000447172 505 ntBASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 AC011558.1-201ENST00000623459 338 ntBASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 HLA-A-209ENST00000638375 975 ntBASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC44A3Q8N4M1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC44A3Q8N4M1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms