Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 C2orf69P3-201ENST00000565542 1120 ntBASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 AP006587.1-201ENST00000534129 1502 ntBASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.34□□□□□ -0.27
VPS13DQ5THJ4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
VPS13DQ5THJ4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13DQ5THJ4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13DQ5THJ4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13DQ5THJ4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 AC010653.2-201ENST00000623505 997 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 AC083849.1-201ENST00000615227 514 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 AL049796.1-201ENST00000565336 1766 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 RNF152P1-201ENST00000397754 604 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 HCG4P8-203ENST00000443049 980 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
VPS13DQ5THJ4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 AL358472.4-201ENST00000633140 710 ntBASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 WWC2-AS2-201ENST00000578387 2183 ntBASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 ECEL1P1-201ENST00000373592 1742 ntBASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 AL450487.1-201ENST00000426799 995 ntBASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 KRT8P41-201ENST00000533985 1514 ntBASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13DQ5THJ4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms