Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC005829.2-201ENST00000571422 1056 ntBASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.27■□□□□ 0.67
PTCHD3Q3KNS1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PTCHD3Q3KNS1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PTCHD3Q3KNS1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 AL390719.1-204ENST00000412397 1219 ntBASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PTCHD3Q3KNS1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTCHD3Q3KNS1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 AP001271.2-201ENST00000624018 1556 ntBASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 AL158211.5-201ENST00000623583 2518 ntBASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.24■□□□□ 0.67
PTCHD3Q3KNS1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 AC233263.1-201ENST00000578059 224 ntBASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 AC006557.6-201ENST00000623071 864 ntBASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms