Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.35□□□□□ -0.11
PRKDCP78527 IL9RP2-201ENST00000423948 1312 ntBASIC14.35□□□□□ -0.11
PRKDCP78527 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.35□□□□□ -0.11
PRKDCP78527 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.35□□□□□ -0.11
PRKDCP78527 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PRKDCP78527 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC14.35□□□□□ -0.11
PRKDCP78527 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.35□□□□□ -0.11
PRKDCP78527 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 BX119927.1-201ENST00000636596 1552 ntBASIC14.35□□□□□ -0.11
PRKDCP78527 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC14.35□□□□□ -0.11
PRKDCP78527 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 STARP1-201ENST00000397973 869 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.34□□□□□ -0.11
PRKDCP78527 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.34□□□□□ -0.11
PRKDCP78527 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 AL353719.1-201ENST00000566847 864 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 AC011298.2-201ENST00000617989 482 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PRKDCP78527 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.34□□□□□ -0.11
PRKDCP78527 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 BX842568.4-201ENST00000421222 227 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 KRT16P4-201ENST00000453883 522 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.34□□□□□ -0.11
PRKDCP78527 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.34□□□□□ -0.11
PRKDCP78527 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 AC127496.7-201ENST00000625110 1798 ntBASIC14.34□□□□□ -0.11
PRKDCP78527 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC14.34□□□□□ -0.11
PRKDCP78527 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PRKDCP78527 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.34□□□□□ -0.11
PRKDCP78527 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.34□□□□□ -0.11
PRKDCP78527 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PRKDCP78527 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PRKDCP78527 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
PRKDCP78527 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 AL035633.1-201ENST00000406139 838 ntBASIC14.33□□□□□ -0.12
PRKDCP78527 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
PRKDCP78527 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.33□□□□□ -0.12
PRKDCP78527 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.33□□□□□ -0.12
PRKDCP78527 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC14.33□□□□□ -0.12
PRKDCP78527 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.33□□□□□ -0.12
PRKDCP78527 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.33□□□□□ -0.12
PRKDCP78527 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.33□□□□□ -0.12
PRKDCP78527 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 AC016734.2-201ENST00000624325 1377 ntBASIC14.33□□□□□ -0.12
PRKDCP78527 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.33□□□□□ -0.12
PRKDCP78527 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PRKDCP78527 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.33□□□□□ -0.12
PRKDCP78527 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.33□□□□□ -0.12
PRKDCP78527 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PRKDCP78527 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.32□□□□□ -0.12
PRKDCP78527 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PRKDCP78527 PMS2P2-201ENST00000425039 1128 ntBASIC14.32□□□□□ -0.12
PRKDCP78527 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.32□□□□□ -0.12
PRKDCP78527 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms