Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
COL4A4P53420 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A4P53420 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A4P53420 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.19■□□□□ 0.98
COL4A4P53420 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A4P53420 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A4P53420 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
COL4A4P53420 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A4P53420 AL359075.1-203ENST00000462729 1002 ntBASIC21.19■□□□□ 0.98
COL4A4P53420 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
COL4A4P53420 AP005212.1-201ENST00000581547 1997 ntBASIC21.19■□□□□ 0.98
COL4A4P53420 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A4P53420 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A4P53420 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A4P53420 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A4P53420 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A4P53420 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 HMGA1P5-201ENST00000412453 271 ntBASIC21.18■□□□□ 0.98
COL4A4P53420 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A4P53420 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A4P53420 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL4A4P53420 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A4P53420 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A4P53420 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A4P53420 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 EGLN1P1-201ENST00000531623 762 ntBASIC21.18■□□□□ 0.98
COL4A4P53420 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.18■□□□□ 0.98
COL4A4P53420 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A4P53420 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A4P53420 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A4P53420 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A4P53420 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
COL4A4P53420 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A4P53420 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A4P53420 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 HCG4P8-203ENST00000443049 980 ntBASIC21.17■□□□□ 0.98
COL4A4P53420 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.17■□□□□ 0.98
COL4A4P53420 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.17■□□□□ 0.98
COL4A4P53420 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A4P53420 AL445675.2-201ENST00000620291 557 ntBASIC21.17■□□□□ 0.98
COL4A4P53420 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL4A4P53420 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A4P53420 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
COL4A4P53420 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL4A4P53420 YBX1P10-201ENST00000444752 975 ntBASIC21.16■□□□□ 0.98
COL4A4P53420 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A4P53420 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL4A4P53420 AC011506.1-201ENST00000474329 610 ntBASIC21.16■□□□□ 0.98
COL4A4P53420 AC097488.1-201ENST00000507834 756 ntBASIC21.16■□□□□ 0.98
COL4A4P53420 KRT126P-201ENST00000549467 1181 ntBASIC21.16■□□□□ 0.98
COL4A4P53420 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.16■□□□□ 0.98
COL4A4P53420 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A4P53420 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A4P53420 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A4P53420 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A4P53420 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A4P53420 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A4P53420 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.15■□□□□ 0.98
COL4A4P53420 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A4P53420 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
COL4A4P53420 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A4P53420 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A4P53420 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A4P53420 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A4P53420 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
COL4A4P53420 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A4P53420 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
COL4A4P53420 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms