Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC005229.4-201ENST00000610085 2198 ntBASIC19.71■□□□□ 0.75
CXCL12P48061 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.71■□□□□ 0.75
CXCL12P48061 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CXCL12P48061 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CXCL12P48061 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.71■□□□□ 0.75
CXCL12P48061 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.71■□□□□ 0.75
CXCL12P48061 AC140113.3-201ENST00000605663 199 ntBASIC19.71■□□□□ 0.75
CXCL12P48061 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.71■□□□□ 0.75
CXCL12P48061 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.71■□□□□ 0.75
CXCL12P48061 AC093458.2-201ENST00000623150 629 ntBASIC19.71■□□□□ 0.75
CXCL12P48061 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.71■□□□□ 0.75
CXCL12P48061 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.71■□□□□ 0.75
CXCL12P48061 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CXCL12P48061 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL12P48061 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.7■□□□□ 0.74
CXCL12P48061 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
CXCL12P48061 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.7■□□□□ 0.74
CXCL12P48061 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.7■□□□□ 0.74
CXCL12P48061 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.7■□□□□ 0.74
CXCL12P48061 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.7■□□□□ 0.74
CXCL12P48061 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL12P48061 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CXCL12P48061 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CXCL12P48061 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.69■□□□□ 0.74
CXCL12P48061 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CXCL12P48061 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.69■□□□□ 0.74
CXCL12P48061 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CXCL12P48061 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.69■□□□□ 0.74
CXCL12P48061 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.69■□□□□ 0.74
CXCL12P48061 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.69■□□□□ 0.74
CXCL12P48061 AL023803.3-201ENST00000615559 522 ntBASIC19.69■□□□□ 0.74
CXCL12P48061 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.69■□□□□ 0.74
CXCL12P48061 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL12P48061 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.69■□□□□ 0.74
CXCL12P48061 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.69■□□□□ 0.74
CXCL12P48061 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL12P48061 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.68■□□□□ 0.74
CXCL12P48061 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL12P48061 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL12P48061 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL12P48061 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.68■□□□□ 0.74
CXCL12P48061 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.68■□□□□ 0.74
CXCL12P48061 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.68■□□□□ 0.74
CXCL12P48061 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.68■□□□□ 0.74
CXCL12P48061 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL12P48061 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.67■□□□□ 0.74
CXCL12P48061 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CXCL12P48061 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CXCL12P48061 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL12P48061 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL12P48061 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL12P48061 AC026396.1-201ENST00000419388 421 ntBASIC19.67■□□□□ 0.74
CXCL12P48061 AL450487.1-201ENST00000426799 995 ntBASIC19.67■□□□□ 0.74
CXCL12P48061 DUSP5P1-201ENST00000441325 1139 ntBASIC19.67■□□□□ 0.74
CXCL12P48061 AL671277.2-201ENST00000458060 996 ntBASIC19.67■□□□□ 0.74
CXCL12P48061 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.67■□□□□ 0.74
CXCL12P48061 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CXCL12P48061 AL353719.1-201ENST00000566847 864 ntBASIC19.67■□□□□ 0.74
CXCL12P48061 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.67■□□□□ 0.74
CXCL12P48061 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.67■□□□□ 0.74
CXCL12P48061 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.67■□□□□ 0.74
CXCL12P48061 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL12P48061 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CXCL12P48061 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.67■□□□□ 0.74
CXCL12P48061 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms