Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC22.31■■□□□ 1.16
HTTP42858 AC139530.3-201ENST00000620344 690 ntBASIC22.31■■□□□ 1.16
HTTP42858 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HTTP42858 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC22.31■■□□□ 1.16
HTTP42858 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HTTP42858 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HTTP42858 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HTTP42858 AL022342.1-201ENST00000400363 863 ntBASIC22.31■■□□□ 1.16
HTTP42858 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.31■■□□□ 1.16
HTTP42858 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC22.31■■□□□ 1.16
HTTP42858 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.31■■□□□ 1.16
HTTP42858 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HTTP42858 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
HTTP42858 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.3■■□□□ 1.16
HTTP42858 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HTTP42858 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 AP006587.1-201ENST00000534129 1502 ntBASIC22.3■■□□□ 1.16
HTTP42858 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
HTTP42858 SNX5-210ENST00000481323 562 ntTSL 3 BASIC22.3■■□□□ 1.16
HTTP42858 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
HTTP42858 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC22.3■■□□□ 1.16
HTTP42858 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC22.3■■□□□ 1.16
HTTP42858 AL023973.1-201ENST00000624619 620 ntBASIC22.3■■□□□ 1.16
HTTP42858 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HTTP42858 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
HTTP42858 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HTTP42858 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC22.3■■□□□ 1.16
HTTP42858 PRSS44-201ENST00000515154 1146 ntBASIC22.3■■□□□ 1.16
HTTP42858 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HTTP42858 AC005229.4-201ENST00000610085 2198 ntBASIC22.3■■□□□ 1.16
HTTP42858 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 AL512604.3-201ENST00000569583 964 ntBASIC22.29■■□□□ 1.16
HTTP42858 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.29■■□□□ 1.16
HTTP42858 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.29■■□□□ 1.16
HTTP42858 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.29■■□□□ 1.16
HTTP42858 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
HTTP42858 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
HTTP42858 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC22.29■■□□□ 1.16
HTTP42858 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
HTTP42858 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HTTP42858 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC22.29■■□□□ 1.16
HTTP42858 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC22.29■■□□□ 1.16
HTTP42858 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC22.29■■□□□ 1.16
HTTP42858 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC22.29■■□□□ 1.16
HTTP42858 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.28■■□□□ 1.16
HTTP42858 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC22.28■■□□□ 1.16
HTTP42858 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC22.28■■□□□ 1.16
HTTP42858 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 SPDYE15P-201ENST00000424157 909 ntBASIC22.28■■□□□ 1.16
HTTP42858 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC22.28■■□□□ 1.16
HTTP42858 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.28■■□□□ 1.16
HTTP42858 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC22.28■■□□□ 1.16
HTTP42858 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.28■■□□□ 1.16
HTTP42858 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
HTTP42858 AC104692.2-201ENST00000603054 253 ntBASIC22.28■■□□□ 1.16
HTTP42858 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HTTP42858 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HTTP42858 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HTTP42858 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HTTP42858 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC22.27■■□□□ 1.16
HTTP42858 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
HTTP42858 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.27■■□□□ 1.16
HTTP42858 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HTTP42858 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC22.27■■□□□ 1.16
HTTP42858 CKBP1-201ENST00000565489 1086 ntBASIC22.27■■□□□ 1.16
HTTP42858 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC22.27■■□□□ 1.16
HTTP42858 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HTTP42858 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms