Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.77■□□□□ 0.6
SDC1P18827 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC1P18827 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.77■□□□□ 0.6
SDC1P18827 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.77■□□□□ 0.6
SDC1P18827 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SDC1P18827 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC1P18827 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.77■□□□□ 0.59
SDC1P18827 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SDC1P18827 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.77■□□□□ 0.59
SDC1P18827 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SDC1P18827 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SDC1P18827 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 AC116351.2-201ENST00000606540 1585 ntBASIC18.76■□□□□ 0.59
SDC1P18827 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SDC1P18827 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SDC1P18827 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.76■□□□□ 0.59
SDC1P18827 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.76■□□□□ 0.59
SDC1P18827 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SDC1P18827 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SDC1P18827 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SDC1P18827 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC1P18827 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC1P18827 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SDC1P18827 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 AL032819.2-201ENST00000624543 2162 ntBASIC18.75■□□□□ 0.59
SDC1P18827 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SDC1P18827 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SDC1P18827 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.75■□□□□ 0.59
SDC1P18827 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.75■□□□□ 0.59
SDC1P18827 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDC1P18827 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SDC1P18827 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SDC1P18827 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SDC1P18827 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.74■□□□□ 0.59
SDC1P18827 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.74■□□□□ 0.59
SDC1P18827 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SDC1P18827 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 MIR935-201ENST00000401179 91 ntBASIC18.74■□□□□ 0.59
SDC1P18827 MIPEPP3-201ENST00000412105 444 ntBASIC18.74■□□□□ 0.59
SDC1P18827 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.74■□□□□ 0.59
SDC1P18827 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.74■□□□□ 0.59
SDC1P18827 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.74■□□□□ 0.59
SDC1P18827 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.74■□□□□ 0.59
SDC1P18827 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDC1P18827 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms