Protein–RNA interactions for Protein: P13942

COL11A2, Collagen alpha-2(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,736 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A2P13942 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A2P13942 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A2P13942 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
COL11A2P13942 AC092338.2-201ENST00000568827 1415 ntBASIC24.3■■□□□ 1.48
COL11A2P13942 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A2P13942 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A2P13942 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A2P13942 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.3■■□□□ 1.48
COL11A2P13942 SLC25A1P2-201ENST00000430693 912 ntBASIC24.3■■□□□ 1.48
COL11A2P13942 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.3■■□□□ 1.48
COL11A2P13942 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.3■■□□□ 1.48
COL11A2P13942 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.3■■□□□ 1.48
COL11A2P13942 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.3■■□□□ 1.48
COL11A2P13942 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.3■■□□□ 1.48
COL11A2P13942 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
COL11A2P13942 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.29■■□□□ 1.48
COL11A2P13942 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC24.29■■□□□ 1.48
COL11A2P13942 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A2P13942 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.28■■□□□ 1.48
COL11A2P13942 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.28■■□□□ 1.48
COL11A2P13942 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.28■■□□□ 1.48
COL11A2P13942 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.28■■□□□ 1.48
COL11A2P13942 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.28■■□□□ 1.48
COL11A2P13942 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 AL023803.3-201ENST00000615559 522 ntBASIC24.28■■□□□ 1.48
COL11A2P13942 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.28■■□□□ 1.48
COL11A2P13942 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A2P13942 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.27■■□□□ 1.48
COL11A2P13942 AL450487.1-201ENST00000426799 995 ntBASIC24.27■■□□□ 1.48
COL11A2P13942 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.27■■□□□ 1.48
COL11A2P13942 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 FEM1AP4-201ENST00000443167 1987 ntBASIC24.27■■□□□ 1.48
COL11A2P13942 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.27■■□□□ 1.48
COL11A2P13942 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A2P13942 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
COL11A2P13942 TPM4P1-201ENST00000436100 807 ntBASIC24.27■■□□□ 1.48
COL11A2P13942 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.27■■□□□ 1.48
COL11A2P13942 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.27■■□□□ 1.48
COL11A2P13942 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.27■■□□□ 1.48
COL11A2P13942 AC012313.10-201ENST00000623509 926 ntBASIC24.27■■□□□ 1.48
COL11A2P13942 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.27■■□□□ 1.48
COL11A2P13942 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.26■■□□□ 1.47
COL11A2P13942 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 FBXW4P1-201ENST00000426721 2239 ntBASIC24.26■■□□□ 1.47
COL11A2P13942 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
COL11A2P13942 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.26■■□□□ 1.47
COL11A2P13942 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.26■■□□□ 1.47
COL11A2P13942 AC011558.1-201ENST00000623459 338 ntBASIC24.26■■□□□ 1.47
COL11A2P13942 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL11A2P13942 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
COL11A2P13942 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
COL11A2P13942 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.25■■□□□ 1.47
COL11A2P13942 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC24.25■■□□□ 1.47
COL11A2P13942 CLEC4GP1-201ENST00000596555 870 ntBASIC24.25■■□□□ 1.47
COL11A2P13942 AC130371.2-201ENST00000619443 611 ntBASIC24.25■■□□□ 1.47
COL11A2P13942 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
COL11A2P13942 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL11A2P13942 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
COL11A2P13942 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC24.24■■□□□ 1.47
COL11A2P13942 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.24■■□□□ 1.47
COL11A2P13942 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.24■■□□□ 1.47
COL11A2P13942 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.24■■□□□ 1.47
COL11A2P13942 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
COL11A2P13942 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
COL11A2P13942 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
COL11A2P13942 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.24■■□□□ 1.47
COL11A2P13942 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.24■■□□□ 1.47
COL11A2P13942 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms