Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS4P0CW20 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS4P0CW20 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS4P0CW20 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 AC123595.1-201ENST00000440769 1046 ntBASIC17.52■□□□□ 0.4
LIMS4P0CW20 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIMS4P0CW20 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS4P0CW20 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS4P0CW20 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS4P0CW20 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
LIMS4P0CW20 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.52■□□□□ 0.39
LIMS4P0CW20 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS4P0CW20 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS4P0CW20 LETM1P2-201ENST00000597330 2178 ntBASIC17.52■□□□□ 0.39
LIMS4P0CW20 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
LIMS4P0CW20 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMS4P0CW20 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LIMS4P0CW20 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMS4P0CW20 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMS4P0CW20 AC142381.2-201ENST00000566120 298 ntBASIC17.51■□□□□ 0.39
LIMS4P0CW20 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
LIMS4P0CW20 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS4P0CW20 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 AL161938.1-201ENST00000569833 2180 ntBASIC17.5■□□□□ 0.39
LIMS4P0CW20 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 AL049812.1-201ENST00000432563 2267 ntBASIC17.5■□□□□ 0.39
LIMS4P0CW20 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 UBE2DNL-204ENST00000602536 740 ntBASIC17.5■□□□□ 0.39
LIMS4P0CW20 AL591742.1-201ENST00000604433 565 ntBASIC17.5■□□□□ 0.39
LIMS4P0CW20 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIMS4P0CW20 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS4P0CW20 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS4P0CW20 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS4P0CW20 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms