Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 AC123595.1-201ENST00000440769 1046 ntBASIC17.52■□□□□ 0.4
LIMS3P0CW19 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS3P0CW19 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS3P0CW19 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
LIMS3P0CW19 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.52■□□□□ 0.39
LIMS3P0CW19 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS3P0CW19 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMS3P0CW19 LETM1P2-201ENST00000597330 2178 ntBASIC17.52■□□□□ 0.39
LIMS3P0CW19 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
LIMS3P0CW19 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMS3P0CW19 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LIMS3P0CW19 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMS3P0CW19 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMS3P0CW19 AC142381.2-201ENST00000566120 298 ntBASIC17.51■□□□□ 0.39
LIMS3P0CW19 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
LIMS3P0CW19 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMS3P0CW19 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 AL161938.1-201ENST00000569833 2180 ntBASIC17.5■□□□□ 0.39
LIMS3P0CW19 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 AL049812.1-201ENST00000432563 2267 ntBASIC17.5■□□□□ 0.39
LIMS3P0CW19 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 UBE2DNL-204ENST00000602536 740 ntBASIC17.5■□□□□ 0.39
LIMS3P0CW19 AL591742.1-201ENST00000604433 565 ntBASIC17.5■□□□□ 0.39
LIMS3P0CW19 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIMS3P0CW19 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMS3P0CW19 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMS3P0CW19 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMS3P0CW19 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms