Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
HOXC4P09017 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HOXC4P09017 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC4P09017 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC4P09017 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
HOXC4P09017 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 AC004980.1-204ENST00000429707 299 ntBASIC19.28■□□□□ 0.68
HOXC4P09017 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
HOXC4P09017 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HOXC4P09017 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 AL691432.2-201ENST00000607222 2038 ntBASIC19.27■□□□□ 0.68
HOXC4P09017 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC4P09017 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.27■□□□□ 0.68
HOXC4P09017 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 LINC01023-201ENST00000606054 436 ntBASIC19.27■□□□□ 0.68
HOXC4P09017 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC4P09017 HLA-A-209ENST00000638375 975 ntBASIC19.27■□□□□ 0.68
HOXC4P09017 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC4P09017 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC4P09017 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.27■□□□□ 0.68
HOXC4P09017 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC4P09017 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC4P09017 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC4P09017 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC4P09017 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
HOXC4P09017 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
HOXC4P09017 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 MMP23A-201ENST00000234610 1017 ntBASIC19.26■□□□□ 0.67
HOXC4P09017 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HOXC4P09017 AC087499.1-201ENST00000418141 1075 ntBASIC19.26■□□□□ 0.67
HOXC4P09017 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HOXC4P09017 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC4P09017 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC4P09017 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.26■□□□□ 0.67
HOXC4P09017 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.26■□□□□ 0.67
HOXC4P09017 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.26■□□□□ 0.67
HOXC4P09017 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HOXC4P09017 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC4P09017 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HOXC4P09017 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC4P09017 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC4P09017 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC4P09017 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC4P09017 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 MESTP1-201ENST00000404287 994 ntBASIC19.25■□□□□ 0.67
HOXC4P09017 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC4P09017 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC4P09017 AC012306.2-201ENST00000609350 630 ntBASIC19.25■□□□□ 0.67
HOXC4P09017 MIR6786-201ENST00000616843 113 ntBASIC19.25■□□□□ 0.67
HOXC4P09017 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC4P09017 AC097493.4-201ENST00000641197 219 ntBASIC19.25■□□□□ 0.67
HOXC4P09017 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC4P09017 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms