Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RB1P06400 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RB1P06400 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 TSPY17P-201ENST00000450329 467 ntBASIC20.93■□□□□ 0.94
RB1P06400 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RB1P06400 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.93■□□□□ 0.94
RB1P06400 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.93■□□□□ 0.94
RB1P06400 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.93■□□□□ 0.94
RB1P06400 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.93■□□□□ 0.94
RB1P06400 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.93■□□□□ 0.94
RB1P06400 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
RB1P06400 AC092338.2-201ENST00000568827 1415 ntBASIC20.93■□□□□ 0.94
RB1P06400 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.93■□□□□ 0.94
RB1P06400 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RB1P06400 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RB1P06400 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.92■□□□□ 0.94
RB1P06400 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.92■□□□□ 0.94
RB1P06400 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.92■□□□□ 0.94
RB1P06400 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RB1P06400 DPP3P2-201ENST00000416030 1696 ntBASIC20.92■□□□□ 0.94
RB1P06400 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.92■□□□□ 0.94
RB1P06400 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RB1P06400 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RB1P06400 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.91■□□□□ 0.94
RB1P06400 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.91■□□□□ 0.94
RB1P06400 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RB1P06400 HOMER2P1-201ENST00000455653 964 ntBASIC20.91■□□□□ 0.94
RB1P06400 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.91■□□□□ 0.94
RB1P06400 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.91■□□□□ 0.94
RB1P06400 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.91■□□□□ 0.94
RB1P06400 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.91■□□□□ 0.94
RB1P06400 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.91■□□□□ 0.94
RB1P06400 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RB1P06400 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.91■□□□□ 0.94
RB1P06400 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.91■□□□□ 0.94
RB1P06400 AL023803.3-201ENST00000615559 522 ntBASIC20.91■□□□□ 0.94
RB1P06400 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.91■□□□□ 0.94
RB1P06400 AC011558.1-201ENST00000623459 338 ntBASIC20.91■□□□□ 0.94
RB1P06400 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.9■□□□□ 0.94
RB1P06400 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.9■□□□□ 0.94
RB1P06400 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RB1P06400 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.9■□□□□ 0.94
RB1P06400 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 PCED1CP-201ENST00000419887 785 ntBASIC20.9■□□□□ 0.94
RB1P06400 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.9■□□□□ 0.94
RB1P06400 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.9■□□□□ 0.94
RB1P06400 KRT18P48-201ENST00000434763 852 ntBASIC20.9■□□□□ 0.94
RB1P06400 FAM86EP-206ENST00000510506 987 ntBASIC20.9■□□□□ 0.94
RB1P06400 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.9■□□□□ 0.94
RB1P06400 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
RB1P06400 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RB1P06400 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RB1P06400 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RB1P06400 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RB1P06400 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RB1P06400 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RB1P06400 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RB1P06400 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.89■□□□□ 0.94
RB1P06400 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RB1P06400 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.89■□□□□ 0.93
RB1P06400 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.89■□□□□ 0.93
RB1P06400 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.89■□□□□ 0.93
RB1P06400 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RB1P06400 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
RB1P06400 PHGDH-210ENST00000641115 1638 ntBASIC20.89■□□□□ 0.93
RB1P06400 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RB1P06400 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
RB1P06400 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms