Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.31■□□□□ 0.36
LMX1BO60663 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1BO60663 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.31■□□□□ 0.36
LMX1BO60663 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1BO60663 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
LMX1BO60663 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 AC093484.2-201ENST00000580996 2166 ntBASIC17.3■□□□□ 0.36
LMX1BO60663 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
LMX1BO60663 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1BO60663 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.3■□□□□ 0.36
LMX1BO60663 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.3■□□□□ 0.36
LMX1BO60663 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 RPS2P4-201ENST00000476944 856 ntBASIC17.3■□□□□ 0.36
LMX1BO60663 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LMX1BO60663 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1BO60663 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1BO60663 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.29■□□□□ 0.36
LMX1BO60663 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.29■□□□□ 0.36
LMX1BO60663 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.29■□□□□ 0.36
LMX1BO60663 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1BO60663 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1BO60663 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1BO60663 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1BO60663 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1BO60663 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1BO60663 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1BO60663 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1BO60663 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 AC005332.7-201ENST00000614046 2005 ntBASIC17.28■□□□□ 0.36
LMX1BO60663 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1BO60663 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1BO60663 LSM12P1-201ENST00000411836 588 ntBASIC17.28■□□□□ 0.36
LMX1BO60663 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.28■□□□□ 0.36
LMX1BO60663 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1BO60663 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.28■□□□□ 0.36
LMX1BO60663 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.28■□□□□ 0.36
LMX1BO60663 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1BO60663 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.28■□□□□ 0.36
LMX1BO60663 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.28■□□□□ 0.36
LMX1BO60663 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.28■□□□□ 0.36
LMX1BO60663 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1BO60663 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
LMX1BO60663 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LMX1BO60663 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
LMX1BO60663 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms