Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 YBX1P10-201ENST00000444752 975 ntBASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 AC131212.4-201ENST00000623606 975 ntBASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
COL6A6A6NMZ7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 AC004980.1-204ENST00000429707 299 ntBASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 PRELID1P1-202ENST00000567272 903 ntBASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 SLC25A6P4-201ENST00000586535 553 ntBASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A6A6NMZ7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AC011484.1-201ENST00000377652 1995 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AC117500.6-201ENST00000624871 588 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AP006587.1-201ENST00000534129 1502 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AC112907.2-201ENST00000448639 330 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 EMBP1-201ENST00000458200 901 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AC104692.2-201ENST00000603054 253 ntBASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A6A6NMZ7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 AL160237.2-201ENST00000556165 472 ntBASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 AC011298.2-201ENST00000617989 482 ntBASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.8■□□□□ 0.44
COL6A6A6NMZ7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 CA15P1-201ENST00000481698 905 ntBASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A6A6NMZ7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms