Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPSF4LA6NMK7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 AC018445.3-201ENST00000624177 1945 ntBASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 AL512625.2-201ENST00000417533 625 ntBASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 PHGDH-210ENST00000641115 1638 ntBASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPSF4LA6NMK7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPSF4LA6NMK7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPSF4LA6NMK7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.14■□□□□ 0.5
CPSF4LA6NMK7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPSF4LA6NMK7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CPSF4LA6NMK7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.14■□□□□ 0.49
CPSF4LA6NMK7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms