Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AF287957.1-201ENST00000607368 1595 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC104966.1-201ENST00000467010 1464 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC133552.1-201ENST00000569988 4007 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 RNU1-49P-201ENST00000363468 159 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 SMARCE1P6-201ENST00000398372 1216 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 TRIM60P16-201ENST00000444048 694 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL133351.3-201ENST00000454998 193 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 UCK2-205ENST00000469256 753 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC068522.1-201ENST00000482895 345 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 NPM1P27-201ENST00000502784 830 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC147055.1-201ENST00000509261 750 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 RNA5SP400-201ENST00000517155 111 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 TOMM20P1-201ENST00000534518 427 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AP001858.2-201ENST00000536213 601 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AP005136.2-201ENST00000583253 1049 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AC124916.2-201ENST00000604416 224 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AL135786.2-201ENST00000608422 615 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 AP001437.1-201ENST00000608783 456 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 TNPO1P2-201ENST00000426249 2665 ntBASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 USP40-202ENST00000409945 1946 ntTSL 2 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 RNU11-6P-201ENST00000391127 133 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 CAV1-204ENST00000393470 598 ntTSL 4 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 HMGB1P32-201ENST00000425971 565 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 RPL34P33-201ENST00000486062 334 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 HMGN1P17-201ENST00000513734 295 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC004232.2-201ENST00000574245 821 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC067852.5-201ENST00000589299 310 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 Z95327.3-201ENST00000610385 572 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 OXSM-209ENST00000626005 309 ntTSL 3 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AL359091.1-201ENST00000449048 1734 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AC093849.1-201ENST00000563631 2209 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 MFSD8-219ENST00000641228 2559 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 AL033543.1-201ENST00000623440 13454 ntBASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC8.02□□□□□ -1.13
CHMP4AQ9BY43 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 GUCY1B2-204ENST00000531898 1979 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AC027575.3-201ENST00000583058 2747 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AP000866.6-201ENST00000638898 3579 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 MIR433-201ENST00000384837 93 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AC093084.1-201ENST00000424233 687 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 RPS7P14-201ENST00000426405 583 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 AK4P6-201ENST00000505168 528 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 SNX18P24-201ENST00000505249 671 ntBASIC8.01□□□□□ -1.13
CHMP4AQ9BY43 APOBEC3AP1-201ENST00000511396 287 ntBASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms