Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 MIR6849-201ENST00000618543 69 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 MIR6811-201ENST00000620409 58 ntBASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC28BQ9BUN5 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 RN7SKP74-201ENST00000362849 309 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC003045.1-201ENST00000398779 713 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 NACAP7-201ENST00000407371 609 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL096829.1-201ENST00000413677 457 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 MGAT2P2-201ENST00000427194 797 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC094019.1-201ENST00000434678 472 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 BMS1P11-201ENST00000442351 885 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 COX4I1P2-201ENST00000447446 547 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL354872.1-201ENST00000456361 967 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 BMS1P9-201ENST00000457640 885 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC005165.2-201ENST00000466070 380 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 PFN1P6-201ENST00000476786 399 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 RN7SL655P-201ENST00000486087 298 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 COX6B1P2-201ENST00000489624 230 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 OR7E157P-201ENST00000494376 911 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC023424.1-201ENST00000496058 459 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 OR7E99P-201ENST00000505750 922 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 CHEK2P2-201ENST00000554701 672 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AP001823.1-201ENST00000604056 1003 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 NDUFB9P1-201ENST00000604683 510 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 MIR8082-201ENST00000612488 81 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC096861.1-201ENST00000616652 240 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC009950.2-201ENST00000636548 183 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 AC020633.1-201ENST00000468439 2247 ntBASIC5.78□□□□□ -1.48
CCDC28BQ9BUN5 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 OR9K1P-202ENST00000641111 3217 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC092634.1-201ENST00000366505 199 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 ELOBP4-201ENST00000423418 296 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 OSTCP4-201ENST00000424397 449 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC108479.1-201ENST00000431142 427 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC242426.1-201ENST00000435270 960 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AL929410.2-201ENST00000451170 189 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 RPL34P33-201ENST00000486062 334 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 OR4A42P-201ENST00000531397 938 ntBASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC28BQ9BUN5 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms