Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
NKX3-1Q99801 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NKX3-1Q99801 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC119674.1-202ENST00000641333 1860 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 ICE2P1-201ENST00000512800 1849 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC107977.1-201ENST00000355745 939 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 RNA5SP232-201ENST00000364144 119 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL096800.1-201ENST00000405326 893 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL133260.1-201ENST00000405720 405 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AKR1B10P1-201ENST00000425765 942 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 IGLV3-4-201ENST00000432300 244 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL365220.1-201ENST00000432923 399 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC128677.1-201ENST00000436016 442 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 CXCR2P1-202ENST00000443392 1074 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 EEF1B2P3-201ENST00000447718 678 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 MTND2P3-201ENST00000452458 470 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 RNU7-157P-201ENST00000459600 66 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 RN7SL39P-201ENST00000462264 297 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC117394.1-201ENST00000477323 567 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AP002981.1-201ENST00000517692 975 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 TPM3P3-201ENST00000521343 354 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC087272.1-201ENST00000523624 533 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AP001858.2-201ENST00000536213 601 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 TDGP1-201ENST00000543961 1229 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 SNRPGP1-201ENST00000553864 222 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC025283.1-201ENST00000572039 734 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 MIR3157-201ENST00000578688 85 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 AL589743.6-201ENST00000611025 117 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 AC104820.1-201ENST00000624183 307 ntBASIC5.28□□□□□ -1.56
NKX3-1Q99801 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
NKX3-1Q99801 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.28□□□□□ -1.56
NKX3-1Q99801 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 RPL11P4-201ENST00000332269 436 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 RNU1-49P-201ENST00000363468 159 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 RNA5SP346-201ENST00000363541 121 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 OOSP1-201ENST00000398992 1270 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 RNU2-18P-201ENST00000411224 162 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL359885.1-201ENST00000415786 903 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms