Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC074141.1-201ENST00000588129 2995 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 NPM1P27-201ENST00000502784 830 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC026402.1-201ENST00000513642 170 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 CASC15-203ENST00000605917 4461 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 RPL10P10-201ENST00000403509 664 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL591848.1-201ENST00000413092 322 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 KCTD10P1-201ENST00000434203 625 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 RPL7P11-201ENST00000437586 658 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC023141.8-201ENST00000442554 208 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 RPL21P129-201ENST00000491732 478 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 OR7H2P-201ENST00000513483 306 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 TOMM20P2-201ENST00000540082 421 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 ITPK1-AS1-201ENST00000553639 4701 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL021368.3-201ENST00000607119 578 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC022726.2-201ENST00000634673 547 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AOX3P-204ENST00000491025 2107 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 PTCD2P2-201ENST00000415579 1095 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 KNOP1P3-201ENST00000446933 426 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 ACA64.4-201ENST00000459070 127 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL020997.2-201ENST00000602607 184 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 AL356752.1-201ENST00000615844 593 ntBASIC5.53□□□□□ -1.52
VPS13AQ96RL7 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 THSD7B-203ENST00000413152 5846 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS13AQ96RL7 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.52□□□□□ -1.52
VPS13AQ96RL7 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC022164.1-201ENST00000568767 2673 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 Z98755.1-201ENST00000407015 1384 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 NCAM1-222ENST00000615285 6045 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 RSL24D1P6-201ENST00000426934 401 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC002075.1-201ENST00000457396 676 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AL035690.1-201ENST00000490892 383 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC005084.1-201ENST00000605160 304 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 257 ms