Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 NACA-216ENST00000550952 2922 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 ASNSP6-201ENST00000592770 1618 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 GAS8-AS1-201ENST00000408886 435 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MED15P8-201ENST00000411601 545 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MTCYBP38-201ENST00000417160 1123 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MRPS10P2-201ENST00000431226 381 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CBX1P4-201ENST00000439415 457 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL031667.1-201ENST00000440222 725 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC114928.1-201ENST00000446516 415 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL031736.1-201ENST00000449688 618 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CASK-AS1-201ENST00000451126 515 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC007000.1-201ENST00000453064 794 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 PTMAP1-205ENST00000455552 325 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL390026.1-201ENST00000456647 457 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RN7SL19P-201ENST00000462522 306 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC117392.1-201ENST00000487061 596 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 LEMD1-208ENST00000495594 637 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC114300.1-201ENST00000502347 280 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 HMGB1P28-201ENST00000507778 552 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 HMGB1P44-201ENST00000508597 572 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RPL37-205ENST00000509877 637 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RN7SKP105-201ENST00000517192 314 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC092709.1-201ENST00000521355 1045 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 COX6B1P6-201ENST00000522347 255 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC137768.1-201ENST00000549998 553 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC074029.1-201ENST00000552531 1044 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 UBE2CP1-201ENST00000557130 554 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC136619.2-201ENST00000563361 631 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RN7SL237P-201ENST00000580912 287 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC009237.13-201ENST00000603193 276 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC015871.2-201ENST00000603605 948 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC009237.12-201ENST00000604755 742 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 NDUFA8P1-201ENST00000605525 367 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL096855.2-201ENST00000605785 369 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC016394.1-201ENST00000608444 833 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 RN7SL820P-201ENST00000616437 299 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC138932.5-201ENST00000617759 563 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC092650.2-201ENST00000619984 902 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 SEPT14P19-203ENST00000633205 211 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 FMO5-203ENST00000441068 1696 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 FAM49A-201ENST00000381323 4670 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MAPK10-354ENST00000641823 2732 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC068870.3-201ENST00000625077 2536 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 METTL18-202ENST00000310392 1521 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MTCO1P23-201ENST00000415223 1526 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC105749.1-201ENST00000631338 2008 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ATP5A1P10-201ENST00000622403 1603 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 231.6 ms