Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
MSH6P52701 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
MSH6P52701 TNPO1P2-201ENST00000426249 2665 ntBASIC8.22□□□□□ -1.09
MSH6P52701 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 RNU11-6P-201ENST00000391127 133 ntBASIC8.22□□□□□ -1.09
MSH6P52701 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC8.22□□□□□ -1.09
MSH6P52701 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC8.22□□□□□ -1.09
MSH6P52701 EIF4A1P7-201ENST00000421800 1220 ntBASIC8.22□□□□□ -1.09
MSH6P52701 CUBNP2-201ENST00000443534 1139 ntBASIC8.22□□□□□ -1.09
MSH6P52701 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC8.22□□□□□ -1.09
MSH6P52701 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH6P52701 AC099521.1-201ENST00000482557 334 ntBASIC8.22□□□□□ -1.09
MSH6P52701 RPS21P4-201ENST00000487122 248 ntBASIC8.22□□□□□ -1.09
MSH6P52701 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC8.22□□□□□ -1.09
MSH6P52701 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC8.22□□□□□ -1.09
MSH6P52701 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC8.22□□□□□ -1.09
MSH6P52701 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC8.22□□□□□ -1.09
MSH6P52701 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC8.22□□□□□ -1.09
MSH6P52701 AC087763.1-201ENST00000603391 286 ntBASIC8.22□□□□□ -1.09
MSH6P52701 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC8.22□□□□□ -1.09
MSH6P52701 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSH6P52701 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC8.21□□□□□ -1.09
MSH6P52701 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC8.21□□□□□ -1.09
MSH6P52701 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSH6P52701 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSH6P52701 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
MSH6P52701 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 RN7SKP166-201ENST00000410812 305 ntBASIC8.21□□□□□ -1.1
MSH6P52701 RPL7L1P9-201ENST00000431298 745 ntBASIC8.21□□□□□ -1.1
MSH6P52701 CEACAMP7-201ENST00000444105 496 ntBASIC8.21□□□□□ -1.1
MSH6P52701 HIGD1AP8-201ENST00000453927 274 ntBASIC8.21□□□□□ -1.1
MSH6P52701 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 RPS3AP15-201ENST00000483874 781 ntBASIC8.21□□□□□ -1.1
MSH6P52701 RN7SL97P-201ENST00000486780 299 ntBASIC8.21□□□□□ -1.1
MSH6P52701 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 AC021146.10-201ENST00000515628 706 ntBASIC8.21□□□□□ -1.1
MSH6P52701 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 DCN-210ENST00000547568 823 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC8.21□□□□□ -1.1
MSH6P52701 AL450226.2-201ENST00000622913 439 ntBASIC8.21□□□□□ -1.1
MSH6P52701 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC8.21□□□□□ -1.1
MSH6P52701 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC8.21□□□□□ -1.1
MSH6P52701 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC8.21□□□□□ -1.1
MSH6P52701 CDY5P-201ENST00000411487 1580 ntBASIC8.2□□□□□ -1.1
MSH6P52701 CDY9P-201ENST00000451397 1580 ntBASIC8.2□□□□□ -1.1
MSH6P52701 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSH6P52701 AL359091.1-201ENST00000449048 1734 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AL589993.1-201ENST00000407450 2524 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSH6P52701 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC8.2□□□□□ -1.1
MSH6P52701 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC8.2□□□□□ -1.1
MSH6P52701 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSH6P52701 RNA5SP319-201ENST00000362768 119 ntBASIC8.2□□□□□ -1.1
MSH6P52701 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC8.2□□□□□ -1.1
MSH6P52701 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC8.2□□□□□ -1.1
MSH6P52701 AC005033.1-201ENST00000428904 813 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC8.2□□□□□ -1.1
MSH6P52701 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC8.2□□□□□ -1.1
MSH6P52701 AC245047.2-201ENST00000441060 530 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC8.2□□□□□ -1.1
MSH6P52701 Z80107.2-201ENST00000445127 392 ntBASIC8.2□□□□□ -1.1
MSH6P52701 RPS23P9-201ENST00000448848 438 ntBASIC8.2□□□□□ -1.1
MSH6P52701 CEACAMP10-202ENST00000495431 496 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC8.2□□□□□ -1.1
MSH6P52701 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC8.2□□□□□ -1.1
MSH6P52701 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.2□□□□□ -1.1
MSH6P52701 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
MSH6P52701 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC8.2□□□□□ -1.1
MSH6P52701 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC8.2□□□□□ -1.1
MSH6P52701 MIR4646-201ENST00000580775 63 ntBASIC8.2□□□□□ -1.1
MSH6P52701 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms