Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 NDUFA3P1-201ENST00000588007 252 ntBASIC7.34□□□□□ -1.23
MSX1P28360 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 AC123788.2-201ENST00000612290 283 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AL365204.3-201ENST00000612448 685 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AP001442.1-201ENST00000617755 659 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 PFN1P2-202ENST00000621347 397 ntBASIC7.34□□□□□ -1.23
MSX1P28360 BTN2A1-203ENST00000429381 3113 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 CPSF7-206ENST00000448745 1749 ntAPPRIS ALT1 TSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 NPEPPS-215ENST00000530173 2864 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ABCA11P-202ENST00000504019 2110 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 INO80C-212ENST00000592173 3245 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 HSD11B1-202ENST00000367027 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ADH7-205ENST00000482593 1420 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 RARSP1-201ENST00000542842 1418 ntBASIC7.34□□□□□ -1.23
MSX1P28360 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
MSX1P28360 DTNA-209ENST00000556414 1626 ntTSL 2 BASIC7.34□□□□□ -1.24
MSX1P28360 AC068512.1-201ENST00000584542 1811 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
MSX1P28360 LHFPL3-AS2-202ENST00000631061 1832 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
MSX1P28360 GABRP-201ENST00000265294 3310 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
MSX1P28360 ZNF343-208ENST00000617391 3300 ntTSL 4 BASIC7.34□□□□□ -1.24
MSX1P28360 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC7.34□□□□□ -1.24
MSX1P28360 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.34□□□□□ -1.24
MSX1P28360 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
MSX1P28360 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.24
MSX1P28360 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 RAD9B-207ENST00000409778 1373 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 MTND4P27-201ENST00000450813 1354 ntBASIC7.33□□□□□ -1.24
MSX1P28360 PAICS-202ENST00000399688 3297 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 AC073525.1-203ENST00000547040 2631 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 Z97832.2-201ENST00000605896 4261 ntBASIC7.33□□□□□ -1.24
MSX1P28360 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 AC009831.5-201ENST00000624000 3189 ntBASIC7.33□□□□□ -1.24
MSX1P28360 GOT2P1-201ENST00000440922 1309 ntBASIC7.33□□□□□ -1.24
MSX1P28360 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 ADAM3A-202ENST00000460383 2528 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 ABCB4-203ENST00000359206 3923 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 NAA40-202ENST00000377793 3664 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 AC010886.1-201ENST00000437380 2869 ntBASIC7.33□□□□□ -1.24
MSX1P28360 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 AC104964.2-201ENST00000562242 4641 ntBASIC7.33□□□□□ -1.24
MSX1P28360 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
MSX1P28360 RNA5SP88-201ENST00000365560 109 ntBASIC7.33□□□□□ -1.24
MSX1P28360 RNU6-877P-201ENST00000383868 107 ntBASIC7.33□□□□□ -1.24
MSX1P28360 MIR1231-201ENST00000408101 92 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC068533.2-201ENST00000411872 306 ntBASIC7.33□□□□□ -1.24
MSX1P28360 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 AL389915.1-201ENST00000422463 466 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 RBMY2JP-201ENST00000425544 1059 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL365295.1-204ENST00000425648 553 ntTSL 4 BASIC7.33□□□□□ -1.24
MSX1P28360 Z68868.1-201ENST00000429048 544 ntBASIC7.33□□□□□ -1.24
MSX1P28360 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC7.33□□□□□ -1.24
MSX1P28360 UBE2FP3-201ENST00000436366 524 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL022721.1-201ENST00000436521 505 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 RN7SL706P-201ENST00000460079 292 ntBASIC7.33□□□□□ -1.24
MSX1P28360 RN7SL91P-201ENST00000469313 291 ntBASIC7.33□□□□□ -1.24
MSX1P28360 RPS29P25-201ENST00000481709 171 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL355076.1-201ENST00000484315 270 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC107956.2-201ENST00000496042 454 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC098583.2-201ENST00000504151 372 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC114967.1-201ENST00000504890 259 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 LEF1-AS1-206ENST00000512129 430 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 CYP4F27P-201ENST00000514557 494 ntBASIC7.33□□□□□ -1.24
MSX1P28360 PAICSP4-201ENST00000517543 1253 ntBASIC7.33□□□□□ -1.24
MSX1P28360 MTCO2P4-201ENST00000517968 247 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC7.33□□□□□ -1.24
MSX1P28360 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC7.33□□□□□ -1.24
MSX1P28360 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 AP003385.2-201ENST00000524910 973 ntBASIC7.33□□□□□ -1.24
MSX1P28360 OR7E1P-201ENST00000533891 958 ntBASIC7.33□□□□□ -1.24
MSX1P28360 EGLN3P1-201ENST00000541727 720 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 AC092133.1-201ENST00000565828 719 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms