Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.16□□□□□ -1.26
COL5A3P25940 AC109583.2-201ENST00000617367 129 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.16□□□□□ -1.26
COL5A3P25940 CYP4F35P-202ENST00000636121 390 ntBASIC7.16□□□□□ -1.26
COL5A3P25940 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.16□□□□□ -1.26
COL5A3P25940 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL5A3P25940 ATM-215ENST00000530958 5718 ntTSL 2 BASIC7.16□□□□□ -1.26
COL5A3P25940 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL5A3P25940 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.16□□□□□ -1.26
COL5A3P25940 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.16□□□□□ -1.26
COL5A3P25940 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL5A3P25940 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL5A3P25940 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL5A3P25940 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 RN7SKP213-201ENST00000410746 298 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.15□□□□□ -1.26
COL5A3P25940 AC007562.1-201ENST00000421819 517 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 AL590762.4-201ENST00000425885 253 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 RBMY2QP-201ENST00000429799 1147 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 AC023274.2-201ENST00000445264 521 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 DUTP1-201ENST00000493631 470 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 AC078878.1-201ENST00000539832 958 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 OR1F2P-201ENST00000570470 933 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.15□□□□□ -1.26
COL5A3P25940 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.15□□□□□ -1.26
COL5A3P25940 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 AC112255.1-201ENST00000624070 2493 ntBASIC7.15□□□□□ -1.26
COL5A3P25940 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
COL5A3P25940 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC7.15□□□□□ -1.26
COL5A3P25940 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.15□□□□□ -1.26
COL5A3P25940 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL5A3P25940 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC7.15□□□□□ -1.26
COL5A3P25940 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL5A3P25940 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.15□□□□□ -1.27
COL5A3P25940 RN7SKP104-201ENST00000362605 328 ntBASIC7.15□□□□□ -1.27
COL5A3P25940 U3.36-201ENST00000408418 213 ntBASIC7.15□□□□□ -1.27
COL5A3P25940 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.15□□□□□ -1.27
COL5A3P25940 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.15□□□□□ -1.27
COL5A3P25940 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.15□□□□□ -1.27
COL5A3P25940 AL645937.3-201ENST00000453647 936 ntBASIC7.15□□□□□ -1.27
COL5A3P25940 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.15□□□□□ -1.27
COL5A3P25940 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC7.15□□□□□ -1.27
COL5A3P25940 RPL10P14-201ENST00000565265 298 ntBASIC7.15□□□□□ -1.27
COL5A3P25940 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.15□□□□□ -1.27
COL5A3P25940 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.15□□□□□ -1.27
COL5A3P25940 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.15□□□□□ -1.27
COL5A3P25940 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC7.15□□□□□ -1.27
COL5A3P25940 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL5A3P25940 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC7.15□□□□□ -1.27
COL5A3P25940 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.27
COL5A3P25940 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC7.15□□□□□ -1.27
COL5A3P25940 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 AC114876.1-201ENST00000490962 1366 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC7.14□□□□□ -1.27
COL5A3P25940 RNA5SP87-201ENST00000384155 118 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC7.14□□□□□ -1.27
COL5A3P25940 RN7SL51P-201ENST00000468230 285 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.14□□□□□ -1.27
COL5A3P25940 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 RNU6-941P-201ENST00000516346 108 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 IGHVIII-76-1-201ENST00000523776 286 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL5A3P25940 AC010245.2-201ENST00000606908 1167 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 MIR6820-201ENST00000611508 62 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 SAMMSON-209ENST00000641222 1100 ntBASIC7.14□□□□□ -1.27
COL5A3P25940 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.14□□□□□ -1.27
COL5A3P25940 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.14□□□□□ -1.27
COL5A3P25940 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL5A3P25940 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL5A3P25940 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.14□□□□□ -1.27
COL5A3P25940 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.14□□□□□ -1.27
COL5A3P25940 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.13□□□□□ -1.27
COL5A3P25940 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms