Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC006213.6-201ENST00000623722 4179 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC107977.1-201ENST00000355745 939 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 CXADRP1-201ENST00000398098 1095 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AL354707.3-201ENST00000427308 331 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AL451136.1-201ENST00000435399 325 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RPL6P30-201ENST00000443382 862 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC097463.1-201ENST00000447288 481 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RANP2-201ENST00000456833 229 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RN7SL170P-201ENST00000487098 295 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC009879.1-201ENST00000520029 839 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RPA2P3-201ENST00000533268 770 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC006512.2-201ENST00000543250 486 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 FAM60CP-201ENST00000591086 664 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 RPSAP75-201ENST00000605848 301 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC015922.4-201ENST00000612568 690 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AL445649.1-201ENST00000615941 691 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 CXADRP3-202ENST00000617265 1100 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 FAM27E2-201ENST00000619668 403 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC024651.2-201ENST00000562480 2098 ntBASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 OOSP1-201ENST00000398992 1270 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ARAFP1-201ENST00000422172 605 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 PLA2G12AP2-201ENST00000424744 264 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 FGF12-202ENST00000430714 603 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 RPL31P53-201ENST00000457065 348 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC091917.2-201ENST00000505002 744 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC011853.1-201ENST00000518911 454 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC092332.1-201ENST00000563684 829 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AL683813.2-201ENST00000605245 502 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC138473.1-201ENST00000605717 526 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 FTO-215ENST00000636491 1676 ntTSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC009779.8-201ENST00000641684 4384 ntBASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CHMP4AQ9BY43 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CHMP4AQ9BY43 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms