Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RNA5SP88-201ENST00000365560 109 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RNU6-1042P-201ENST00000384204 107 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 SNORD116-23-201ENST00000384645 92 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL132875.1-201ENST00000403623 949 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL355375.1-201ENST00000405686 392 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 MORN2-202ENST00000409077 465 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RNU2-66P-201ENST00000410650 161 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RNU6-272P-201ENST00000411028 104 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 BCRP8-201ENST00000412037 255 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL136133.1-201ENST00000413694 376 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ATG4AP1-201ENST00000416893 538 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RPL4P4-201ENST00000422486 1284 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL031963.2-201ENST00000433761 398 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL031663.1-201ENST00000437445 219 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PRSS48-201ENST00000441586 560 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 FTH1P7-201ENST00000450676 552 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC098828.2-201ENST00000452342 573 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 SSXP1-201ENST00000453640 473 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RN7SL861P-201ENST00000473793 285 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 RPL5P15-201ENST00000475870 897 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL161747.1-201ENST00000480068 358 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC079768.1-201ENST00000503181 711 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 MTCO1P30-201ENST00000515244 580 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 FABP5P5-201ENST00000515537 406 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 SCARNA20.1-201ENST00000516009 138 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC008802.1-201ENST00000519121 791 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 DAZAP2-210ENST00000551313 587 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL358332.1-201ENST00000555649 813 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 MIR548AB-201ENST00000584917 84 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC093074.1-201ENST00000590280 556 ntTSL 4 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL109918.2-201ENST00000605188 279 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC026368.1-201ENST00000614934 690 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 FAM74A6-203ENST00000615956 481 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC239600.2-201ENST00000619615 1165 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AL451054.1-201ENST00000621770 772 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC079228.1-201ENST00000624774 1049 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 AC012560.1-201ENST00000634930 459 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 LINC02034-201ENST00000635368 760 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ZMYM6-203ENST00000373333 1473 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CDR1-202ENST00000625883 1485 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 OR5BR1P-201ENST00000524992 1330 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 KIAA0753-207ENST00000572370 3263 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CCL28-201ENST00000361115 3126 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 VEZF1P1-201ENST00000423931 1541 ntBASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC095038.1-201ENST00000429248 1591 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 AC130360.2-201ENST00000533477 1556 ntBASIC5.93□□□□□ -1.46
CCDC140Q96MF4 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms