Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LIM2P55344 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LIM2P55344 SELENOWP1-201ENST00000322792 252 ntBASIC5.62□□□□□ -1.51
LIM2P55344 RN7SKP77-201ENST00000363261 353 ntBASIC5.62□□□□□ -1.51
LIM2P55344 OR7E156P-201ENST00000400303 464 ntBASIC5.62□□□□□ -1.51
LIM2P55344 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.62□□□□□ -1.51
LIM2P55344 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.62□□□□□ -1.51
LIM2P55344 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 AL590399.2-201ENST00000427536 309 ntBASIC5.62□□□□□ -1.51
LIM2P55344 GEMIN2P1-201ENST00000454246 752 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 TOMM22P4-201ENST00000511318 336 ntBASIC5.62□□□□□ -1.51
LIM2P55344 SCARNA18.1-201ENST00000516330 83 ntBASIC5.62□□□□□ -1.51
LIM2P55344 OR4A42P-201ENST00000531397 938 ntBASIC5.62□□□□□ -1.51
LIM2P55344 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.62□□□□□ -1.51
LIM2P55344 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.62□□□□□ -1.51
LIM2P55344 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.62□□□□□ -1.51
LIM2P55344 NPM1P42-201ENST00000560329 862 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.62□□□□□ -1.51
LIM2P55344 AC090826.1-203ENST00000569235 490 ntBASIC5.62□□□□□ -1.51
LIM2P55344 LINC00556-201ENST00000569603 412 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AL499605.1-201ENST00000604628 403 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.62□□□□□ -1.51
LIM2P55344 AL136131.3-201ENST00000607600 188 ntBASIC5.62□□□□□ -1.51
LIM2P55344 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 AC024884.1-201ENST00000620583 399 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIM2P55344 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 AF287957.1-201ENST00000607368 1595 ntBASIC5.62□□□□□ -1.51
LIM2P55344 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.62□□□□□ -1.51
LIM2P55344 AL161756.3-201ENST00000641216 2071 ntBASIC5.62□□□□□ -1.51
LIM2P55344 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIM2P55344 AP002833.3-201ENST00000625075 2265 ntBASIC5.62□□□□□ -1.51
LIM2P55344 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIM2P55344 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.61□□□□□ -1.51
LIM2P55344 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LIM2P55344 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 RN7SKP275-201ENST00000364626 301 ntBASIC5.61□□□□□ -1.51
LIM2P55344 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.61□□□□□ -1.51
LIM2P55344 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AL354890.1-201ENST00000413730 346 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.61□□□□□ -1.51
LIM2P55344 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.61□□□□□ -1.51
LIM2P55344 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.61□□□□□ -1.51
LIM2P55344 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.61□□□□□ -1.51
LIM2P55344 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.61□□□□□ -1.51
LIM2P55344 TUBB4BP6-201ENST00000437576 479 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 DNAJC19P5-201ENST00000443295 316 ntBASIC5.61□□□□□ -1.51
LIM2P55344 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.61□□□□□ -1.51
LIM2P55344 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.61□□□□□ -1.51
LIM2P55344 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.61□□□□□ -1.51
LIM2P55344 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.61□□□□□ -1.51
LIM2P55344 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.61□□□□□ -1.51
LIM2P55344 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.61□□□□□ -1.51
LIM2P55344 PFN1P6-201ENST00000476786 399 ntBASIC5.61□□□□□ -1.51
LIM2P55344 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.61□□□□□ -1.51
LIM2P55344 AC025458.1-201ENST00000506046 166 ntBASIC5.61□□□□□ -1.51
LIM2P55344 RN7SKP70-201ENST00000516655 271 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AP003080.1-202ENST00000526526 915 ntBASIC5.61□□□□□ -1.51
LIM2P55344 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.61□□□□□ -1.51
LIM2P55344 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 KYNUP3-201ENST00000574386 1341 ntBASIC5.61□□□□□ -1.51
LIM2P55344 MIR6793-201ENST00000612376 63 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AL355974.3-201ENST00000617383 467 ntBASIC5.61□□□□□ -1.51
LIM2P55344 AC130304.1-201ENST00000622942 2385 ntBASIC5.61□□□□□ -1.51
LIM2P55344 MAPK10-350ENST00000641777 965 ntBASIC5.61□□□□□ -1.51
LIM2P55344 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIM2P55344 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
LIM2P55344 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 271.3 ms