Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CDX1P47902 AC007485.2-201ENST00000623493 1667 ntBASIC5.18□□□□□ -1.58
CDX1P47902 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.18□□□□□ -1.58
CDX1P47902 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.18□□□□□ -1.58
CDX1P47902 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CDX1P47902 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 TCP11X1-202ENST00000622971 1372 ntBASIC5.17□□□□□ -1.58
CDX1P47902 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 ADAM24P-201ENST00000398655 2101 ntBASIC5.17□□□□□ -1.58
CDX1P47902 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 RNA5SP453-201ENST00000362503 119 ntBASIC5.17□□□□□ -1.58
CDX1P47902 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.17□□□□□ -1.58
CDX1P47902 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CDX1P47902 SNORD65-201ENST00000391079 73 ntBASIC5.17□□□□□ -1.58
CDX1P47902 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 AL359694.1-201ENST00000403247 604 ntBASIC5.17□□□□□ -1.58
CDX1P47902 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.17□□□□□ -1.58
CDX1P47902 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.17□□□□□ -1.58
CDX1P47902 AL445213.1-201ENST00000412589 747 ntBASIC5.17□□□□□ -1.58
CDX1P47902 RANP6-201ENST00000413691 644 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.17□□□□□ -1.58
CDX1P47902 DSTNP5-201ENST00000427921 523 ntBASIC5.17□□□□□ -1.58
CDX1P47902 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 RPL12P16-201ENST00000431098 498 ntBASIC5.17□□□□□ -1.58
CDX1P47902 MRPS33P4-201ENST00000434892 317 ntBASIC5.17□□□□□ -1.58
CDX1P47902 CLNS1AP1-201ENST00000435954 682 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 AC096632.2-201ENST00000438139 1239 ntBASIC5.17□□□□□ -1.58
CDX1P47902 COL11A2P1-205ENST00000441798 676 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 RBMY2HP-201ENST00000457961 720 ntBASIC5.17□□□□□ -1.58
CDX1P47902 RPS7P10-201ENST00000464254 603 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC005165.2-201ENST00000466070 380 ntBASIC5.17□□□□□ -1.58
CDX1P47902 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 PSMA2P2-201ENST00000504319 686 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC092349.1-201ENST00000504903 310 ntBASIC5.17□□□□□ -1.58
CDX1P47902 RNU6-491P-201ENST00000516099 110 ntBASIC5.17□□□□□ -1.58
CDX1P47902 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 AC092868.3-201ENST00000560515 784 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC004232.1-201ENST00000571388 208 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AP001357.1-201ENST00000586304 1053 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.17□□□□□ -1.58
CDX1P47902 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 AC093635.1-201ENST00000609028 555 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.17□□□□□ -1.58
CDX1P47902 GAPDHP41-201ENST00000613707 975 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC004241.2-201ENST00000614562 444 ntBASIC5.17□□□□□ -1.58
CDX1P47902 AC003001.2-201ENST00000616294 831 ntBASIC5.17□□□□□ -1.58
CDX1P47902 LINC00216-201ENST00000623548 1126 ntBASIC5.17□□□□□ -1.58
CDX1P47902 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.17□□□□□ -1.58
CDX1P47902 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 AC096992.2-201ENST00000609553 1684 ntBASIC5.17□□□□□ -1.58
CDX1P47902 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.17□□□□□ -1.58
CDX1P47902 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CDX1P47902 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CDX1P47902 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CDX1P47902 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CDX1P47902 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CDX1P47902 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CDX1P47902 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CDX1P47902 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.16□□□□□ -1.58
CDX1P47902 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CDX1P47902 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CDX1P47902 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.16□□□□□ -1.58
CDX1P47902 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.16□□□□□ -1.58
CDX1P47902 PPIAP24-201ENST00000328558 471 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms