Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC8.52□□□□□ -1.05
COL9A1P20849 RNA5SP473-201ENST00000516402 125 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 PPP1R1AP1-201ENST00000525622 425 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 AC068587.4-201ENST00000533893 186 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC233290.2-201ENST00000552852 390 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 DNM1P34-202ENST00000567850 315 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC025198.1-201ENST00000578331 419 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC068020.1-201ENST00000594215 661 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC130352.1-201ENST00000602979 661 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 Z84480.1-201ENST00000605131 311 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC103710.3-201ENST00000608157 948 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC009268.2-201ENST00000621925 457 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 SPRR5-201ENST00000636302 817 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 ST3GAL6-201ENST00000265261 3362 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 PARP11-204ENST00000447133 4377 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 LINC00963-202ENST00000419300 9557 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 TRIM43-201ENST00000272395 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 TP63-204ENST00000392460 1668 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 TUBA1A-202ENST00000301071 1915 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 TRIM49D1-202ENST00000530311 2164 ntAPPRIS P2 TSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 ATP2B2-203ENST00000383800 8900 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 ITIH2-202ENST00000379587 2848 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC240565.2-201ENST00000623180 2096 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 SOX9-AS1-217ENST00000623935 1563 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 CYP4A11-203ENST00000371905 1725 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 CDR1-202ENST00000625883 1485 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 RPE-216ENST00000454822 2130 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 MEIS1-212ENST00000495021 2836 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 CYP4A22-202ENST00000371890 1780 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 AL008729.1-203ENST00000606150 2305 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 ZNF714-210ENST00000620627 2066 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 DCTN4-203ENST00000447998 4208 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 OR1J2-201ENST00000335302 942 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
COL9A1P20849 CISD1P1-201ENST00000393907 327 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 IL6-203ENST00000401651 539 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 SLC2A11-205ENST00000403208 564 ntTSL 4 BASIC8.51□□□□□ -1.05
COL9A1P20849 RNU6-77P-201ENST00000410554 91 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 RN7SKP119-201ENST00000410753 273 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC083875.1-201ENST00000419509 405 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 RAD23BP1-201ENST00000421404 1227 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC011747.1-201ENST00000425678 565 ntTSL 4 BASIC8.51□□□□□ -1.05
COL9A1P20849 SKP1P3-201ENST00000429280 487 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC109583.1-201ENST00000432156 268 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 RPL36AP53-201ENST00000432891 316 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 PMS2P9-201ENST00000441237 515 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 PMS2P11-201ENST00000451831 574 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC069213.3-201ENST00000454858 474 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC099563.1-201ENST00000456086 418 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 MRPS17P3-201ENST00000465453 385 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC112206.1-201ENST00000468416 477 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 TUBBP11-201ENST00000472255 252 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 RPL17P2-201ENST00000491913 451 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 OR7E83P-201ENST00000511021 970 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 RNU6-835P-201ENST00000516974 104 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AP005902.2-201ENST00000518393 307 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 LY96-202ENST00000518893 430 ntTSL 3 BASIC8.51□□□□□ -1.05
COL9A1P20849 OR5B19P-201ENST00000531766 928 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 OR7E161P-201ENST00000533722 967 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 ST3GAL3-237ENST00000533933 834 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 GSTM3-206ENST00000540225 678 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC008269.2-201ENST00000561915 1105 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC8.51□□□□□ -1.05
COL9A1P20849 SLFN5-203ENST00000592325 1225 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 RPL23AP90-201ENST00000603820 236 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 OR1X1P-201ENST00000606159 931 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC8.51□□□□□ -1.05
COL9A1P20849 NCAPD2P1-201ENST00000432906 1801 ntBASIC8.51□□□□□ -1.05
COL9A1P20849 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 FAT4-201ENST00000335110 9669 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 CFAP58-202ENST00000369704 3313 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 GABRA1-203ENST00000428797 4285 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 TRIM49-202ENST00000532501 1437 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC8.51□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms