Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 RN7SKP288-201ENST00000516227 268 ntBASIC7.07□□□□□ -1.28
COL1A1P02452 AC139365.2-201ENST00000517972 253 ntBASIC7.07□□□□□ -1.28
COL1A1P02452 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.07□□□□□ -1.28
COL1A1P02452 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.07□□□□□ -1.28
COL1A1P02452 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.07□□□□□ -1.28
COL1A1P02452 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.07□□□□□ -1.28
COL1A1P02452 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.07□□□□□ -1.28
COL1A1P02452 DOCK11P1-201ENST00000553480 5932 ntBASIC7.07□□□□□ -1.28
COL1A1P02452 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.07□□□□□ -1.28
COL1A1P02452 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL1A1P02452 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL1A1P02452 MRE11P1-201ENST00000464884 2127 ntBASIC7.07□□□□□ -1.28
COL1A1P02452 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
COL1A1P02452 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL1A1P02452 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
COL1A1P02452 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL1A1P02452 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.07□□□□□ -1.28
COL1A1P02452 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL1A1P02452 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 AL159987.1-201ENST00000347911 293 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 RNU6-171P-201ENST00000384354 107 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 RNA5SP251-201ENST00000410614 137 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AP000534.2-201ENST00000412729 568 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.06□□□□□ -1.28
COL1A1P02452 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.06□□□□□ -1.28
COL1A1P02452 HMGB3P24-201ENST00000433260 622 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.06□□□□□ -1.28
COL1A1P02452 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.06□□□□□ -1.28
COL1A1P02452 RN7SL727P-201ENST00000482164 296 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 RNU6-615P-201ENST00000516065 106 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AC027026.1-201ENST00000532323 742 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.06□□□□□ -1.28
COL1A1P02452 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.06□□□□□ -1.28
COL1A1P02452 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 AC004948.1-201ENST00000609858 672 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 AC007683.2-201ENST00000624681 714 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 MFSD8-219ENST00000641228 2559 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 AC235565.1-201ENST00000456962 1325 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
COL1A1P02452 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.06□□□□□ -1.28
COL1A1P02452 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL1A1P02452 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC7.06□□□□□ -1.28
COL1A1P02452 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
COL1A1P02452 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 AC089998.1-201ENST00000548575 3141 ntBASIC7.06□□□□□ -1.28
COL1A1P02452 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL1A1P02452 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.06□□□□□ -1.28
COL1A1P02452 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
COL1A1P02452 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
COL1A1P02452 GAPDHP24-201ENST00000328713 983 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.05□□□□□ -1.28
COL1A1P02452 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.05□□□□□ -1.28
COL1A1P02452 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.05□□□□□ -1.28
COL1A1P02452 AC109780.1-201ENST00000451768 1344 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 FRG2FP-204ENST00000453982 852 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 AP006245.2-201ENST00000522004 300 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.05□□□□□ -1.28
COL1A1P02452 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.05□□□□□ -1.28
COL1A1P02452 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 OR4A42P-201ENST00000531397 938 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.05□□□□□ -1.28
COL1A1P02452 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.05□□□□□ -1.28
COL1A1P02452 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.05□□□□□ -1.28
COL1A1P02452 AC016769.4-201ENST00000616893 535 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.05□□□□□ -1.28
COL1A1P02452 AF117829.2-201ENST00000619538 361 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 AL034408.1-201ENST00000637712 664 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL1A1P02452 SRRM1P3-201ENST00000426911 2678 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 THAP12P9-201ENST00000503971 2360 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL1A1P02452 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
COL1A1P02452 AC007342.5-201ENST00000571340 2142 ntBASIC7.05□□□□□ -1.28
COL1A1P02452 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL1A1P02452 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms