Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 TET1P1-201ENST00000426627 2301 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP284-201ENST00000384547 118 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AL132875.1-201ENST00000403623 949 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 SNORA11B-201ENST00000408175 129 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC116036.1-201ENST00000412199 367 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 MTND6P12-201ENST00000428247 522 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 PPIAP10-201ENST00000438675 458 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC093719.1-201ENST00000480427 441 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 Y_RNA.667-201ENST00000516212 107 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 SCARNA21.2-201ENST00000516600 166 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AP001858.2-201ENST00000536213 601 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC090286.3-201ENST00000573133 187 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC125494.2-201ENST00000602431 657 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 MIR6886-201ENST00000619864 61 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC073488.3-201ENST00000631611 778 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AP001153.1-201ENST00000641024 338 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 AC110373.1-201ENST00000505994 3505 ntBASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TM9SF3Q9HD45 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP350-201ENST00000363298 111 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 RNU1-49P-201ENST00000363468 159 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 MORF4-201ENST00000447135 971 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 RN7SL214P-201ENST00000487317 265 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 NPM1P27-201ENST00000502784 830 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP438-201ENST00000516561 112 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP434-201ENST00000516647 121 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 Y_RNA.710-201ENST00000516975 110 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC007066.2-202ENST00000566531 914 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AL591167.1-201ENST00000607321 456 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AC127024.6-201ENST00000621598 424 ntBASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.17□□□□□ -1.42
TM9SF3Q9HD45 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms