Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.53□□□□□ -1.2
COL18A1P39060 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
COL18A1P39060 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 AP003119.3-201ENST00000566747 4192 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
COL18A1P39060 RNA5SP319-201ENST00000362768 119 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 RPA2P2-201ENST00000419698 796 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 AC016027.5-201ENST00000427227 210 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 DSTNP5-201ENST00000427921 523 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 AL731534.1-201ENST00000434711 269 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 AC073850.1-201ENST00000449243 255 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 RPL7P61-201ENST00000451721 751 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 RPL7L1P3-201ENST00000455249 689 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 AC074255.1-201ENST00000511259 501 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 AC022832.1-201ENST00000530718 645 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 AC139697.1-201ENST00000548429 745 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 BLZF2P-201ENST00000553776 1130 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
COL18A1P39060 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.53□□□□□ -1.2
COL18A1P39060 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.2
COL18A1P39060 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.52□□□□□ -1.2
COL18A1P39060 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
COL18A1P39060 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC7.52□□□□□ -1.21
COL18A1P39060 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.52□□□□□ -1.21
COL18A1P39060 AL389915.2-201ENST00000454576 441 ntBASIC7.52□□□□□ -1.21
COL18A1P39060 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.52□□□□□ -1.21
COL18A1P39060 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.52□□□□□ -1.21
COL18A1P39060 SLC25A14P1-201ENST00000502867 901 ntBASIC7.52□□□□□ -1.21
COL18A1P39060 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL18A1P39060 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 AC092821.2-201ENST00000545710 2042 ntBASIC7.52□□□□□ -1.21
COL18A1P39060 Z82209.2-201ENST00000623410 2012 ntBASIC7.52□□□□□ -1.21
COL18A1P39060 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.52□□□□□ -1.21
COL18A1P39060 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL18A1P39060 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 HIGD1AP8-201ENST00000453927 274 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 RPL7P45-201ENST00000455851 743 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC7.51□□□□□ -1.21
COL18A1P39060 HIGD1AP5-201ENST00000529959 259 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC087763.1-201ENST00000603391 286 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC109583.2-201ENST00000617367 129 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL18A1P39060 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC092070.2-203ENST00000598377 3644 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 DUTP5-201ENST00000406790 469 ntBASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms