Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 AC106782.6-201ENST00000611264 512 ntBASIC7□□□□□ -1.29
COL8A1P27658 FAM27E3-202ENST00000614611 340 ntBASIC7□□□□□ -1.29
COL8A1P27658 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 SEM1-224ENST00000623693 729 ntTSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 LINC01572-201ENST00000561611 2194 ntTSL 3 BASIC7□□□□□ -1.29
COL8A1P27658 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 C9orf72-206ENST00000619707 3339 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 TCTN1-201ENST00000377654 1539 ntTSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 AL590763.1-201ENST00000398297 1545 ntBASIC7□□□□□ -1.29
COL8A1P27658 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
COL8A1P27658 APOL3-202ENST00000361710 3563 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 PARP9-205ENST00000477522 3128 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 RARSP1-201ENST00000542842 1418 ntBASIC7□□□□□ -1.29
COL8A1P27658 ZNF80-203ENST00000619534 2216 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC7□□□□□ -1.29
COL8A1P27658 OR10AB1P-202ENST00000641219 1686 ntBASIC7□□□□□ -1.29
COL8A1P27658 ZNF611-206ENST00000595798 2395 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL8A1P27658 TMEM144-201ENST00000296529 3442 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 PTPDC1-201ENST00000288976 4398 ntAPPRIS P4 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 DGKB-206ENST00000407950 3651 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 GRHL1-201ENST00000324907 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC092646.2-201ENST00000431242 2095 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 LRRC4C-204ENST00000530763 2669 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 ABCF2-202ENST00000287844 3546 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 HSPA8P17-201ENST00000427029 1382 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 MTMR3-205ENST00000406629 3758 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 TDRD9-201ENST00000339063 3447 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL359694.2-201ENST00000567753 1615 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 CCR4-201ENST00000330953 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 Y_RNA.296-201ENST00000364930 108 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 RNU6-767P-201ENST00000384132 107 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC104297.1-201ENST00000393779 870 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AL356432.1-201ENST00000405809 419 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 SNORA11D-201ENST00000408548 128 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 SNORA11E-201ENST00000408778 128 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 RNA5SP209-201ENST00000411237 97 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 TIMM8AP1-201ENST00000419283 295 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 RNGTTP1-201ENST00000420965 728 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 RPL39P6-201ENST00000448289 150 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 FAR2P1-206ENST00000449736 709 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 SNRPGP6-201ENST00000451124 220 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 EZR-AS1-201ENST00000451712 217 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 MTCO3P11-201ENST00000455103 774 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AL162395.1-201ENST00000457882 422 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC020636.1-201ENST00000469268 565 ntTSL 4 BASIC6.99□□□□□ -1.29
COL8A1P27658 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC008629.2-201ENST00000503783 483 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 RNU6-1046P-201ENST00000516538 107 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.99□□□□□ -1.29
COL8A1P27658 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AP005597.4-201ENST00000526762 229 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 CR383656.6-201ENST00000550518 394 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 LINC01397-201ENST00000554808 579 ntTSL 4 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 FAM30C-201ENST00000561158 410 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL355375.2-201ENST00000574825 175 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AL669831.4-202ENST00000590817 238 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC048344.3-201ENST00000605512 251 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC009779.8-202ENST00000607990 932 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 Metazoa_SRP.29-201ENST00000616220 280 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AL121890.2-201ENST00000617644 465 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 LINC02028-221ENST00000622169 621 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 AC026124.1-201ENST00000545709 3457 ntTSL 5 BASIC6.99□□□□□ -1.29
COL8A1P27658 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL8A1P27658 AL390195.2-201ENST00000564771 2023 ntBASIC6.99□□□□□ -1.29
COL8A1P27658 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms