Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AC131649.2-201ENST00000624925 4439 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 PANDAR-201ENST00000629595 1506 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 LRRC37A9P-201ENST00000603850 5376 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 U3.36-201ENST00000408418 213 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 MYL6P5-201ENST00000412707 459 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC112187.1-201ENST00000455837 479 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 RN7SL447P-201ENST00000494711 245 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 SNRPCP2-201ENST00000504370 475 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC013701.1-201ENST00000522657 465 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 OR9K1P-202ENST00000641111 3217 ntBASIC9.6□□□□□ -0.87
IFT140Q96RY7 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
IFT140Q96RY7 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
IFT140Q96RY7 RN7SKP104-201ENST00000362605 328 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 AC019205.1-201ENST00000421830 730 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 AL049745.1-201ENST00000433953 286 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 OR6D1P-201ENST00000436165 939 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 RPS29P33-201ENST00000456717 146 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 RPS3AP41-201ENST00000462701 778 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 MFSD8-216ENST00000641147 4009 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 AC105749.1-201ENST00000631338 2008 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 MIR133B-201ENST00000362210 119 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 AL035419.1-201ENST00000397037 564 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 RPS18P6-201ENST00000476880 458 ntBASIC9.59□□□□□ -0.87
IFT140Q96RY7 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
IFT140Q96RY7 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
IFT140Q96RY7 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.88
IFT140Q96RY7 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC011369.2-201ENST00000624423 1567 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC013488.1-201ENST00000526618 1838 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC245028.1-201ENST00000423259 256 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms