Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC42Q96M95 TEX41-271ENST00000628213 993 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC42Q96M95 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC42Q96M95 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC42Q96M95 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC42Q96M95 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.37□□□□□ -1.39
CCDC42Q96M95 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC42Q96M95 AC027279.4-201ENST00000624371 2072 ntBASIC6.37□□□□□ -1.39
CCDC42Q96M95 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC42Q96M95 CASC19-260ENST00000641828 2001 ntBASIC6.37□□□□□ -1.39
CCDC42Q96M95 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC42Q96M95 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC011933.2-201ENST00000578539 2790 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC022306.1-201ENST00000560489 1562 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 SNORA21-201ENST00000362423 132 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AL132875.1-201ENST00000403623 949 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 RPEP4-201ENST00000437636 602 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC096775.1-201ENST00000437724 448 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 ARMC4P1-201ENST00000438905 707 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC092601.1-201ENST00000444526 383 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC073072.2-201ENST00000447425 348 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 RPL12P30-201ENST00000488389 499 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 SNX18P25-201ENST00000510539 758 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 ZNF322P1-201ENST00000568013 1209 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 RFPL4AP6-201ENST00000616792 846 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AL357562.1-201ENST00000624911 609 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 AC232271.1-201ENST00000602455 2715 ntBASIC6.36□□□□□ -1.39
CCDC42Q96M95 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
CCDC42Q96M95 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC42Q96M95 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 SNORA64.3-201ENST00000365647 134 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 PSMA6P1-201ENST00000400275 741 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 SNRPEP6-201ENST00000407465 277 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 PPIAP32-201ENST00000449940 472 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC002553.3-201ENST00000453002 341 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 RPS4XP17-201ENST00000479057 754 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC111000.6-201ENST00000514471 709 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC012368.3-201ENST00000604190 219 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 MIR6883-201ENST00000614952 78 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AC096708.4-201ENST00000620563 552 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
CCDC42Q96M95 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC42Q96M95 LINC01613-201ENST00000561476 2780 ntBASIC6.35□□□□□ -1.39
CCDC42Q96M95 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC42Q96M95 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC42Q96M95 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 AC140479.2-201ENST00000421567 3130 ntBASIC6.34□□□□□ -1.39
CCDC42Q96M95 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CCDC42Q96M95 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC42Q96M95 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms