Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.56□□□□□ -1.2
COL18A1P39060 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.56□□□□□ -1.2
COL18A1P39060 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 SNORA16A-201ENST00000384342 137 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC007562.1-201ENST00000421819 517 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC023274.2-201ENST00000445264 521 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AL603882.1-201ENST00000463059 681 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 IGLV3-24-201ENST00000517477 197 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.56□□□□□ -1.2
COL18A1P39060 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7.56□□□□□ -1.2
COL18A1P39060 MIR3691-201ENST00000578066 90 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
COL18A1P39060 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC7.55□□□□□ -1.2
COL18A1P39060 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.55□□□□□ -1.2
COL18A1P39060 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.55□□□□□ -1.2
COL18A1P39060 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.55□□□□□ -1.2
COL18A1P39060 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.55□□□□□ -1.2
COL18A1P39060 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 AL049779.2-201ENST00000553847 315 ntBASIC7.55□□□□□ -1.2
COL18A1P39060 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 AC087783.2-201ENST00000605070 562 ntBASIC7.55□□□□□ -1.2
COL18A1P39060 AL445528.2-201ENST00000620582 470 ntBASIC7.55□□□□□ -1.2
COL18A1P39060 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.55□□□□□ -1.2
COL18A1P39060 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.55□□□□□ -1.2
COL18A1P39060 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.55□□□□□ -1.2
COL18A1P39060 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL18A1P39060 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
COL18A1P39060 LDHAP2-201ENST00000437325 985 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 RPL15P21-201ENST00000495592 567 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 RN7SL591P-201ENST00000496150 292 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.54□□□□□ -1.2
COL18A1P39060 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 AC091193.1-201ENST00000604640 448 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 AL049539.1-201ENST00000611964 459 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 AC005224.3-201ENST00000584683 2140 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL18A1P39060 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL18A1P39060 CDC123-202ENST00000378900 933 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 RPS26P13-201ENST00000419030 330 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 VN1R54P-201ENST00000435210 1049 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 AC015864.1-201ENST00000496512 544 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
COL18A1P39060 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC7.54□□□□□ -1.2
COL18A1P39060 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.54□□□□□ -1.2
COL18A1P39060 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 OR1F2P-201ENST00000570470 933 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.54□□□□□ -1.2
COL18A1P39060 AC133644.2-201ENST00000608142 540 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.54□□□□□ -1.2
COL18A1P39060 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.54□□□□□ -1.2
COL18A1P39060 AC119674.1-217ENST00000641942 1086 ntBASIC7.54□□□□□ -1.2
COL18A1P39060 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 MFSD8-239ENST00000641590 2479 ntBASIC7.53□□□□□ -1.2
COL18A1P39060 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL18A1P39060 ATM-215ENST00000530958 5718 ntTSL 2 BASIC7.53□□□□□ -1.2
COL18A1P39060 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms