Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RPS4XP5-201ENST00000419038 768 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.03□□□□□ -1.28
SCN4AP35499 RPS11P7-201ENST00000442125 465 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 AC005297.1-201ENST00000444765 862 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 RPL7P61-201ENST00000451721 751 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 AC073594.1-201ENST00000462065 364 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.03□□□□□ -1.28
SCN4AP35499 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.03□□□□□ -1.28
SCN4AP35499 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 AP001922.4-201ENST00000526967 290 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 TXNP4-201ENST00000575018 310 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 AL139099.4-201ENST00000614802 114 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 AC018765.1-201ENST00000623357 3446 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 AC105114.1-201ENST00000624795 1862 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
SCN4AP35499 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 PABPC1P8-201ENST00000452851 2086 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.02□□□□□ -1.29
SCN4AP35499 FO082842.1-201ENST00000423552 1370 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 RNA5SP333-201ENST00000363466 118 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 RNA5SP334-201ENST00000364825 118 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AC099677.3-201ENST00000427081 395 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.02□□□□□ -1.29
SCN4AP35499 PSMD10P3-201ENST00000437000 448 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 RPS7P3-201ENST00000443360 580 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AC092967.1-201ENST00000449016 481 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 MRE11P1-201ENST00000464884 2127 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.02□□□□□ -1.29
SCN4AP35499 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.02□□□□□ -1.29
SCN4AP35499 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.02□□□□□ -1.29
SCN4AP35499 AL049779.2-201ENST00000553847 315 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.02□□□□□ -1.29
SCN4AP35499 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 RBM22P12-201ENST00000567098 1255 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 MIR5095-201ENST00000578844 88 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 AC087763.1-201ENST00000603391 286 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 CASC19-243ENST00000641588 1546 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 TMEM75-201ENST00000624314 2165 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.02□□□□□ -1.29
SCN4AP35499 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.02□□□□□ -1.29
SCN4AP35499 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SCN4AP35499 AC011504.1-201ENST00000623331 4103 ntBASIC7.02□□□□□ -1.29
SCN4AP35499 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.02□□□□□ -1.29
SCN4AP35499 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
SCN4AP35499 AC005294.1-201ENST00000355509 281 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 OR10R3P-201ENST00000361688 942 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SCN4AP35499 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AL139415.1-201ENST00000424862 352 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.01□□□□□ -1.29
SCN4AP35499 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.01□□□□□ -1.29
SCN4AP35499 AL772161.1-201ENST00000439130 476 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AL450023.1-201ENST00000450868 751 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC087672.1-201ENST00000479876 766 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC110775.1-201ENST00000513721 462 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.01□□□□□ -1.29
SCN4AP35499 AL671862.1-201ENST00000515851 349 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AC073581.1-201ENST00000519036 575 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SCN4AP35499 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC087783.2-201ENST00000605070 562 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 OR11H2-202ENST00000641517 1085 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 AC011815.2-201ENST00000618230 2021 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.01□□□□□ -1.29
SCN4AP35499 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC7.01□□□□□ -1.29
SCN4AP35499 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
SCN4AP35499 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC112243.1-201ENST00000623949 3851 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SCN4AP35499 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
SCN4AP35499 AC009804.1-201ENST00000400949 179 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.01□□□□□ -1.29
SCN4AP35499 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.01□□□□□ -1.29
SCN4AP35499 EIF2S2P3-201ENST00000428356 999 ntBASIC7.01□□□□□ -1.29
SCN4AP35499 AC019185.1-201ENST00000442718 389 ntBASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms