Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP429-201ENST00000363688 109 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RN7SKP239-201ENST00000364814 295 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
COL9A1P20849 RNU6-1300P-201ENST00000391046 108 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 CCDC134-202ENST00000402061 525 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 VIM2P-201ENST00000402383 1294 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 GAPDHP55-201ENST00000423136 803 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC009228.1-203ENST00000430105 432 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 VDAC2P3-201ENST00000430995 828 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RPL12P15-201ENST00000433385 499 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AL022324.2-201ENST00000434827 780 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 HMGB1P18-201ENST00000438801 619 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 ACTP1-201ENST00000440793 383 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RPSAP49-201ENST00000445182 886 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AL353194.1-201ENST00000451507 441 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC073522.1-201ENST00000483312 377 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RPL34P33-201ENST00000486062 334 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC107385.1-201ENST00000507985 778 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC048346.1-201ENST00000510247 144 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RPL7L1P13-201ENST00000511702 739 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 RNY4P37-201ENST00000516225 96 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 SLN-202ENST00000525934 436 ntAPPRIS P1 TSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AP003122.3-201ENST00000526316 255 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC123788.1-201ENST00000526922 783 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC084121.2-201ENST00000528788 264 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 LINC01397-201ENST00000554808 579 ntTSL 4 BASIC8.54□□□□□ -1.04
COL9A1P20849 GNG2-215ENST00000557376 573 ntTSL 4 BASIC8.54□□□□□ -1.04
COL9A1P20849 LCMT1-AS1-202ENST00000563962 766 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 NUTF2P8-201ENST00000604593 363 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 CNTNAP3P1-201ENST00000616657 906 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 MIR6861-201ENST00000618657 64 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 LINC02028-221ENST00000622169 621 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC093909.6-201ENST00000624757 775 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC243725.1-201ENST00000637164 436 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 NDUFV3-201ENST00000340344 4676 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 FAM83F-201ENST00000333407 15561 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 EPHB2-204ENST00000400191 10816 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 CELF1-202ENST00000358597 2108 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 LIMCH1-209ENST00000509277 3474 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 CDH26-202ENST00000348616 3182 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 ASB15-205ENST00000451215 2956 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 CNDP1-203ENST00000582365 4111 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 GOSR2-234ENST00000640138 3408 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 OR5BR1P-201ENST00000524992 1330 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 CLDN2-202ENST00000540876 2919 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 ABHD3-205ENST00000578270 2080 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 GRIK2-202ENST00000358361 1981 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 TUBB1-201ENST00000217133 3496 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 SMG6-202ENST00000354901 3473 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 NVL-202ENST00000340871 2431 ntTSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 PREPL-208ENST00000410081 3080 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 RPL12P38-202ENST00000588627 2319 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MYH8-201ENST00000403437 6041 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 POU6F2-207ENST00000518318 5925 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 SULT1C2-201ENST00000251481 2795 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MYO6-203ENST00000369981 8692 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 C11orf57-201ENST00000280352 3693 ntAPPRIS ALT1 TSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 U91328.2-201ENST00000606723 4130 ntTSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MARK2P4-201ENST00000503381 2380 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 UGT2B28-201ENST00000335568 1833 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 SLC9B2-204ENST00000503230 1826 ntTSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
COL9A1P20849 OR13H1-201ENST00000338616 927 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
COL9A1P20849 RNU6-702P-201ENST00000364982 107 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AL451142.1-201ENST00000375867 775 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 Y_RNA.395-201ENST00000383945 109 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 SNORA51.7-201ENST00000384171 134 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
COL9A1P20849 RNA5SP256-201ENST00000390978 113 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AL356432.2-201ENST00000407841 422 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC092042.2-201ENST00000417304 331 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 HCG21-204ENST00000419481 605 ntTSL 3 BASIC8.53□□□□□ -1.04
COL9A1P20849 NIP7P1-201ENST00000433227 512 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 IFNA20P-201ENST00000436840 528 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 COX6CP18-201ENST00000448769 222 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 CACYBPP2-201ENST00000453625 678 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC8.53□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms