Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.53□□□□□ -1.36
DKK3Q9UBP4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
DKK3Q9UBP4 PARP4P1-201ENST00000435945 2337 ntBASIC6.53□□□□□ -1.36
DKK3Q9UBP4 AL627171.1-201ENST00000618845 1308 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RNA5SP435-201ENST00000364044 108 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 PSMA6P1-201ENST00000400275 741 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL023284.3-201ENST00000407767 334 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RNA5SP198-201ENST00000410376 127 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL359885.1-201ENST00000415786 903 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL139415.1-201ENST00000424862 352 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL645638.1-201ENST00000440519 361 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RNF2P1-201ENST00000442955 1010 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL161722.1-201ENST00000446972 1032 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 MTND5P8-201ENST00000449817 1083 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC144530.1-201ENST00000452862 555 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 HGF-207ENST00000453018 721 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RN7SL39P-201ENST00000462264 297 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AP002371.1-201ENST00000463604 433 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 SNORA58-201ENST00000505219 137 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC122718.2-201ENST00000505325 591 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 CYCSP25-201ENST00000525280 316 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC023158.1-201ENST00000561632 1025 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 MIR5095-201ENST00000578844 88 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RN7SL230P-201ENST00000580835 303 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OR4H6P-202ENST00000603819 340 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC117490.2-201ENST00000610042 594 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AP001885.1-201ENST00000621658 558 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 PPBPP2-201ENST00000513150 1362 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC025809.2-201ENST00000625085 1802 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC123769.1-201ENST00000530992 3192 ntBASIC6.52□□□□□ -1.37
DKK3Q9UBP4 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.52□□□□□ -1.37
DKK3Q9UBP4 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 AL157831.2-201ENST00000564681 3095 ntBASIC6.51□□□□□ -1.37
DKK3Q9UBP4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 AL050305.1-201ENST00000399993 1230 ntBASIC6.51□□□□□ -1.37
DKK3Q9UBP4 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.51□□□□□ -1.37
DKK3Q9UBP4 CYCSP51-201ENST00000443545 318 ntBASIC6.51□□□□□ -1.37
DKK3Q9UBP4 OR2L9P-201ENST00000444456 913 ntBASIC6.51□□□□□ -1.37
DKK3Q9UBP4 AC097359.1-201ENST00000447946 463 ntBASIC6.51□□□□□ -1.37
DKK3Q9UBP4 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms