Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 RPS4XP9-201ENST00000405151 780 ntBASIC3.5□□□□□ -1.85
HSPG2P98160 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC3.5□□□□□ -1.85
HSPG2P98160 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 AC022034.3-201ENST00000471393 478 ntBASIC3.5□□□□□ -1.85
HSPG2P98160 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.5□□□□□ -1.85
HSPG2P98160 AC078878.1-201ENST00000539832 958 ntBASIC3.5□□□□□ -1.85
HSPG2P98160 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC3.5□□□□□ -1.85
HSPG2P98160 AC112694.2-201ENST00000623697 768 ntBASIC3.5□□□□□ -1.85
HSPG2P98160 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 ZMYM3-205ENST00000373984 5253 ntTSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 KCNB1-201ENST00000371741 11879 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 SALL4P7-201ENST00000555779 3120 ntBASIC3.5□□□□□ -1.85
HSPG2P98160 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HSPG2P98160 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC3.5□□□□□ -1.85
HSPG2P98160 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HSPG2P98160 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AC092692.1-201ENST00000623625 2595 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AL078599.1-201ENST00000402075 293 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 NDUFA12P1-201ENST00000455914 406 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 MIR2117-201ENST00000516780 80 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC3.49□□□□□ -1.85
HSPG2P98160 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HSPG2P98160 AC145423.1-201ENST00000605712 336 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC3.49□□□□□ -1.85
HSPG2P98160 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 SPATA13-206ENST00000424834 8603 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AC114947.2-201ENST00000565748 2125 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 RHOT1P3-201ENST00000436571 331 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 RPL23AP60-201ENST00000450011 454 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 MIR4675-201ENST00000577898 77 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AL020997.2-201ENST00000602607 184 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 BTAF1-201ENST00000265990 7250 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AL353796.1-201ENST00000561542 3241 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 IMMTP1-201ENST00000435590 2219 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 RPL7AP10-201ENST00000481016 791 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 NPM1P27-201ENST00000502784 830 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 BNIP3P33-201ENST00000598912 569 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HSPG2P98160 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 LAMA3-203ENST00000399516 9834 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 CHST6-201ENST00000332272 7957 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AMOTL1-202ENST00000317829 8844 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC3.49□□□□□ -1.85
HSPG2P98160 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HSPG2P98160 RNA5SP388-201ENST00000362584 119 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 SNORA70.4-201ENST00000365509 134 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 MRRF-207ENST00000373729 870 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 NPM1P40-201ENST00000412758 733 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC3.49□□□□□ -1.85
HSPG2P98160 CNOT7P1-201ENST00000429006 852 ntBASIC3.49□□□□□ -1.85
HSPG2P98160 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HSPG2P98160 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC3.49□□□□□ -1.85
HSPG2P98160 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms