Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CDX1P47902 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CDX1P47902 AL121839.2-201ENST00000565058 6943 ntBASIC5.21□□□□□ -1.57
CDX1P47902 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
CDX1P47902 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CDX1P47902 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
CDX1P47902 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
CDX1P47902 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
CDX1P47902 AC217777.1-201ENST00000570034 1471 ntBASIC5.21□□□□□ -1.58
CDX1P47902 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
CDX1P47902 AL589826.1-201ENST00000340697 249 ntBASIC5.21□□□□□ -1.58
CDX1P47902 RNA5SP140-201ENST00000364524 92 ntBASIC5.21□□□□□ -1.58
CDX1P47902 SNORA7A-201ENST00000384765 139 ntBASIC5.21□□□□□ -1.58
CDX1P47902 HMGA1P8-201ENST00000414130 321 ntBASIC5.21□□□□□ -1.58
CDX1P47902 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 AL445528.1-201ENST00000426330 420 ntBASIC5.21□□□□□ -1.58
CDX1P47902 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 AL390879.1-201ENST00000439143 386 ntBASIC5.21□□□□□ -1.58
CDX1P47902 RPL12P49-201ENST00000441100 121 ntBASIC5.21□□□□□ -1.58
CDX1P47902 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 UBBP5-201ENST00000446970 266 ntBASIC5.21□□□□□ -1.58
CDX1P47902 AL513343.1-201ENST00000451818 792 ntBASIC5.21□□□□□ -1.58
CDX1P47902 RPL26P30-201ENST00000453533 435 ntBASIC5.21□□□□□ -1.58
CDX1P47902 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 AL139156.3-201ENST00000454802 394 ntBASIC5.21□□□□□ -1.58
CDX1P47902 RN7SL836P-201ENST00000476140 296 ntBASIC5.21□□□□□ -1.58
CDX1P47902 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.21□□□□□ -1.58
CDX1P47902 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC5.21□□□□□ -1.58
CDX1P47902 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 AC019322.1-201ENST00000571869 389 ntBASIC5.21□□□□□ -1.58
CDX1P47902 MTND2P13-201ENST00000577438 1039 ntBASIC5.21□□□□□ -1.58
CDX1P47902 MIR3157-201ENST00000578688 85 ntBASIC5.21□□□□□ -1.58
CDX1P47902 CTSLP2-201ENST00000580501 394 ntBASIC5.21□□□□□ -1.58
CDX1P47902 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.21□□□□□ -1.58
CDX1P47902 AL354696.1-201ENST00000614652 497 ntBASIC5.21□□□□□ -1.58
CDX1P47902 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.21□□□□□ -1.58
CDX1P47902 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.21□□□□□ -1.58
CDX1P47902 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.21□□□□□ -1.58
CDX1P47902 AC105105.5-201ENST00000622635 1294 ntBASIC5.21□□□□□ -1.58
CDX1P47902 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.21□□□□□ -1.58
CDX1P47902 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CDX1P47902 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.21□□□□□ -1.58
CDX1P47902 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CDX1P47902 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 AL359976.1-201ENST00000418655 3528 ntBASIC5.21□□□□□ -1.58
CDX1P47902 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
CDX1P47902 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.21□□□□□ -1.58
CDX1P47902 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CDX1P47902 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.21□□□□□ -1.58
CDX1P47902 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
CDX1P47902 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
CDX1P47902 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.2□□□□□ -1.58
CDX1P47902 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.2□□□□□ -1.58
CDX1P47902 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 RPL24P4-201ENST00000326586 421 ntBASIC5.2□□□□□ -1.58
CDX1P47902 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 RNA5SP188-201ENST00000362916 129 ntBASIC5.2□□□□□ -1.58
CDX1P47902 SNORA38B-201ENST00000363524 131 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AL590635.1-201ENST00000406314 586 ntBASIC5.2□□□□□ -1.58
CDX1P47902 RN7SKP146-201ENST00000410242 334 ntBASIC5.2□□□□□ -1.58
CDX1P47902 RN7SKP296-201ENST00000411185 341 ntBASIC5.2□□□□□ -1.58
CDX1P47902 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CDX1P47902 RPS7P12-201ENST00000422385 582 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.2□□□□□ -1.58
CDX1P47902 AC092651.1-201ENST00000426110 312 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AC017019.1-201ENST00000426129 261 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AC006455.6-201ENST00000426192 893 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AL590399.2-201ENST00000427536 309 ntBASIC5.2□□□□□ -1.58
CDX1P47902 AL590623.1-201ENST00000427864 105 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms