Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
MSX2P35548 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
MSX2P35548 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX2P35548 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSX2P35548 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX2P35548 AC011815.2-201ENST00000618230 2021 ntBASIC6.32□□□□□ -1.4
MSX2P35548 MTND4P10-201ENST00000446199 1363 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC068769.1-201ENST00000474767 2426 ntBASIC6.31□□□□□ -1.4
MSX2P35548 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 AL022323.4-201ENST00000623980 13120 ntBASIC6.31□□□□□ -1.4
MSX2P35548 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC6.31□□□□□ -1.4
MSX2P35548 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 KIAA0753-207ENST00000572370 3263 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 U3.1-201ENST00000362500 215 ntBASIC6.31□□□□□ -1.4
MSX2P35548 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 RNU1-46P-201ENST00000384425 164 ntBASIC6.31□□□□□ -1.4
MSX2P35548 HNRNPCP2-201ENST00000399515 881 ntBASIC6.31□□□□□ -1.4
MSX2P35548 RNA5SP251-201ENST00000410614 137 ntBASIC6.31□□□□□ -1.4
MSX2P35548 RN7SKP97-201ENST00000410966 333 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC116036.1-201ENST00000412199 367 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 RBMY2JP-201ENST00000425544 1059 ntBASIC6.31□□□□□ -1.4
MSX2P35548 FO393414.1-201ENST00000428697 1184 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 MTND2P21-201ENST00000436242 1042 ntBASIC6.31□□□□□ -1.4
MSX2P35548 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 ARMC8P1-201ENST00000443069 1289 ntBASIC6.31□□□□□ -1.4
MSX2P35548 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 PYM1-204ENST00000454792 884 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 AP002345.1-201ENST00000456493 928 ntBASIC6.31□□□□□ -1.4
MSX2P35548 CCNJP2-201ENST00000457810 1163 ntBASIC6.31□□□□□ -1.4
MSX2P35548 RN7SL213P-201ENST00000463482 317 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC008379.1-201ENST00000463655 464 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 RPL21P18-201ENST00000469899 480 ntBASIC6.31□□□□□ -1.4
MSX2P35548 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 BET1P1-201ENST00000482276 359 ntBASIC6.31□□□□□ -1.4
MSX2P35548 RN7SL518P-201ENST00000491887 280 ntBASIC6.31□□□□□ -1.4
MSX2P35548 OR9N1P-202ENST00000494289 481 ntBASIC6.31□□□□□ -1.4
MSX2P35548 OR2A20P-203ENST00000498397 1268 ntBASIC6.31□□□□□ -1.4
MSX2P35548 ENPP7P3-201ENST00000509123 241 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC083906.1-201ENST00000509298 406 ntBASIC6.31□□□□□ -1.4
MSX2P35548 NACAP6-201ENST00000509572 622 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 RNA5SP518-201ENST00000515957 119 ntBASIC6.31□□□□□ -1.4
MSX2P35548 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.31□□□□□ -1.4
MSX2P35548 OR10V3P-201ENST00000525712 725 ntBASIC6.31□□□□□ -1.4
MSX2P35548 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 AC027369.2-201ENST00000528030 440 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.31□□□□□ -1.4
MSX2P35548 LYZ-202ENST00000548839 558 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 AC093014.1-201ENST00000548926 724 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 COX6CP11-201ENST00000555293 229 ntBASIC6.31□□□□□ -1.4
MSX2P35548 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSX2P35548 AC092720.1-203ENST00000563921 550 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 AC093524.1-201ENST00000564266 1094 ntBASIC6.31□□□□□ -1.4
MSX2P35548 PPIAP14-201ENST00000577627 496 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AP001120.4-201ENST00000590231 108 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC007255.2-201ENST00000604053 631 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX2P35548 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC022306.2-201ENST00000617563 647 ntBASIC6.31□□□□□ -1.4
MSX2P35548 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 AL035461.2-201ENST00000619201 524 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms