Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRAF3IP2-AS1-209ENST00000532226 2191 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 PRAC1-201ENST00000290294 386 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
MSX1P28360 OR6N2-201ENST00000339258 954 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
MSX1P28360 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 CTH-201ENST00000346806 1196 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 SNORA71D-201ENST00000363484 134 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 SNORD65.1-201ENST00000390889 71 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC133644.1-201ENST00000398171 937 ntBASIC7.38□□□□□ -1.23
MSX1P28360 HMGB3P18-201ENST00000406327 590 ntBASIC7.38□□□□□ -1.23
MSX1P28360 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 YBX1P8-201ENST00000421881 943 ntBASIC7.38□□□□□ -1.23
MSX1P28360 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 RPL5P6-201ENST00000425640 886 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AP000317.1-201ENST00000427022 805 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 RPL31P54-201ENST00000429803 370 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AL050321.1-201ENST00000432363 400 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AL022238.1-201ENST00000442557 355 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC013399.1-201ENST00000450311 418 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AL161937.1-202ENST00000451960 341 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AC007731.3-201ENST00000458154 446 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 RN7SL272P-201ENST00000487762 289 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC021678.1-201ENST00000505195 936 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 AC009646.1-201ENST00000510455 318 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AC034232.2-201ENST00000511579 917 ntTSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 AC100849.1-202ENST00000517949 562 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AC008802.1-201ENST00000519121 791 ntBASIC7.38□□□□□ -1.23
MSX1P28360 LINC01170-201ENST00000519703 406 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 PTK2-241ENST00000522950 548 ntTSL 4 BASIC7.38□□□□□ -1.23
MSX1P28360 AP000879.2-201ENST00000530525 497 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AK6P1-201ENST00000540219 478 ntBASIC7.38□□□□□ -1.23
MSX1P28360 MUCL1-202ENST00000546809 439 ntAPPRIS ALT2 TSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AL160314.2-202ENST00000553792 534 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 IGHV1OR15-4-201ENST00000560037 348 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC7.38□□□□□ -1.23
MSX1P28360 AC090607.2-201ENST00000560331 695 ntBASIC7.38□□□□□ -1.23
MSX1P28360 HMGB1P33-201ENST00000563485 527 ntBASIC7.38□□□□□ -1.23
MSX1P28360 ZNF83-209ENST00000596930 560 ntTSL 4 BASIC7.38□□□□□ -1.23
MSX1P28360 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 AC005084.1-201ENST00000605160 304 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AL161729.2-201ENST00000605700 456 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC093635.1-201ENST00000609028 555 ntBASIC7.38□□□□□ -1.23
MSX1P28360 RN7SL113P-201ENST00000619959 299 ntBASIC7.38□□□□□ -1.23
MSX1P28360 AC134981.1-201ENST00000628076 348 ntBASIC7.38□□□□□ -1.23
MSX1P28360 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 GULP1-202ENST00000409580 3544 ntAPPRIS P3 TSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 EPS15L1-214ENST00000602009 3915 ntTSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 SYTL4-204ENST00000372989 3885 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 LRRC31-204ENST00000523069 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 TRIM53BP-201ENST00000532912 1720 ntBASIC7.38□□□□□ -1.23
MSX1P28360 MRPL22-201ENST00000265229 3035 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 FGG-201ENST00000336098 1659 ntTSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 ZNF812P-201ENST00000457674 1694 ntBASIC7.38□□□□□ -1.23
MSX1P28360 THAP12P6-201ENST00000431978 2310 ntBASIC7.38□□□□□ -1.23
MSX1P28360 EPB41L1-201ENST00000202028 3514 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 ABLIM1-205ENST00000369266 2230 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 FAM13C-215ENST00000614220 3388 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 AC114786.1-201ENST00000512892 1415 ntBASIC7.37□□□□□ -1.23
MSX1P28360 ZNF345-202ENST00000420450 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 LAX1-203ENST00000442561 3023 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 MIR137HG-205ENST00000634594 3586 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 UBQLNL-201ENST00000380184 2313 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
MSX1P28360 MELK-207ENST00000536860 2342 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 AC110926.1-201ENST00000412499 2825 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR4K15-201ENST00000305051 1216 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
MSX1P28360 Y_RNA.296-201ENST00000364930 108 ntBASIC7.37□□□□□ -1.23
MSX1P28360 CSNK2B-202ENST00000375866 936 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 SNORA40.3-201ENST00000390964 122 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AL161787.1-201ENST00000401543 174 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR4F7P-201ENST00000402444 931 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR4F1P-201ENST00000405102 938 ntBASIC7.37□□□□□ -1.23
MSX1P28360 RN7SKP26-201ENST00000410247 293 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 RBM22P7-201ENST00000421321 280 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC069157.1-201ENST00000421749 137 ntBASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms