Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BIN2P1-201ENST00000504996 1530 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL6A3P12111 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 NLRC5-203ENST00000436936 6724 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 SALL4P7-201ENST00000555779 3120 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AC027807.1-201ENST00000559921 996 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AC106730.2-201ENST00000566641 540 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AL139041.1-201ENST00000605480 610 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AC005962.2-201ENST00000611427 652 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 CALCOCO1-201ENST00000262059 5866 ntAPPRIS ALT1 TSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 CASC19-205ENST00000641013 1411 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC104162.1-201ENST00000430831 2382 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 NPR3-202ENST00000326958 6380 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 C8orf37-201ENST00000286688 3334 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL6A3P12111 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 RN7SKP149-201ENST00000363008 344 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 FAM96AP1-201ENST00000430879 482 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 SAP18P1-201ENST00000512058 390 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 NDUFB4P12-201ENST00000513465 390 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A3P12111 RN7SL690P-201ENST00000582087 240 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AL953862.2-201ENST00000603089 820 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC105749.1-201ENST00000631338 2008 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC183089.2-201ENST00000637931 916 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A3P12111 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 SPTAN1-201ENST00000358161 7794 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 ARHGEF11-201ENST00000361409 5788 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 RNU6-525P-201ENST00000363685 104 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 Y_RNA.333-201ENST00000365274 102 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 VDAC2P4-201ENST00000452925 711 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A3P12111 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.87□□□□□ -1.47
COL6A3P12111 GCSHP4-201ENST00000538792 439 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A3P12111 UBE2FP2-201ENST00000566646 462 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A3P12111 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A3P12111 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A3P12111 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 AC016251.2-201ENST00000623393 3089 ntBASIC5.87□□□□□ -1.47
COL6A3P12111 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL6A3P12111 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A3P12111 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A3P12111 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 ARHGAP19-201ENST00000358308 5390 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL6A3P12111 RN7SKP145-201ENST00000363291 303 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AL023284.3-201ENST00000407767 334 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AC211486.3-201ENST00000412694 621 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AP001324.1-201ENST00000428553 399 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A3P12111 MIR4260-201ENST00000583107 67 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AC024255.1-201ENST00000614376 102 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 AC131649.2-201ENST00000624925 4439 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A3P12111 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL6A3P12111 DOPEY2-202ENST00000399151 7685 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 OR10R3P-201ENST00000361688 942 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 987.7 ms