Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.88□□□□□ -1.47
TNFP01375 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 BX323845.3-201ENST00000428215 527 ntBASIC5.88□□□□□ -1.47
TNFP01375 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.88□□□□□ -1.47
TNFP01375 AC023274.2-201ENST00000445264 521 ntBASIC5.88□□□□□ -1.47
TNFP01375 AL445665.1-202ENST00000452436 324 ntBASIC5.88□□□□□ -1.47
TNFP01375 OR2AF1P-201ENST00000454899 889 ntBASIC5.88□□□□□ -1.47
TNFP01375 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC5.88□□□□□ -1.47
TNFP01375 RPL7L1P3-201ENST00000455249 689 ntBASIC5.88□□□□□ -1.47
TNFP01375 AL022319.1-201ENST00000458183 1167 ntBASIC5.88□□□□□ -1.47
TNFP01375 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.88□□□□□ -1.47
TNFP01375 AC068522.1-201ENST00000482895 345 ntBASIC5.88□□□□□ -1.47
TNFP01375 RN7SL57P-201ENST00000493687 290 ntBASIC5.88□□□□□ -1.47
TNFP01375 AL356801.1-201ENST00000559320 294 ntBASIC5.88□□□□□ -1.47
TNFP01375 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.88□□□□□ -1.47
TNFP01375 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.88□□□□□ -1.47
TNFP01375 AL596275.2-208ENST00000641192 594 ntBASIC5.88□□□□□ -1.47
TNFP01375 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.88□□□□□ -1.47
TNFP01375 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 AC016251.2-201ENST00000623393 3089 ntBASIC5.88□□□□□ -1.47
TNFP01375 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
TNFP01375 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.88□□□□□ -1.47
TNFP01375 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
TNFP01375 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.88□□□□□ -1.47
TNFP01375 BRD7P6-201ENST00000431406 1860 ntBASIC5.88□□□□□ -1.47
TNFP01375 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 AC110716.2-201ENST00000563865 3945 ntBASIC5.87□□□□□ -1.47
TNFP01375 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 AC016583.1-201ENST00000624221 2431 ntBASIC5.87□□□□□ -1.47
TNFP01375 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
TNFP01375 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 RN7SKP77-201ENST00000363261 353 ntBASIC5.87□□□□□ -1.47
TNFP01375 RN7SKP69-201ENST00000365390 305 ntBASIC5.87□□□□□ -1.47
TNFP01375 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
TNFP01375 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
TNFP01375 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 RNA5SP178-201ENST00000410380 128 ntBASIC5.87□□□□□ -1.47
TNFP01375 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 AC126120.1-201ENST00000431082 470 ntBASIC5.87□□□□□ -1.47
TNFP01375 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
TNFP01375 AL512637.1-201ENST00000439523 1231 ntBASIC5.87□□□□□ -1.47
TNFP01375 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 AL391987.1-201ENST00000441025 200 ntBASIC5.87□□□□□ -1.47
TNFP01375 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 AC104164.1-201ENST00000460282 590 ntBASIC5.87□□□□□ -1.47
TNFP01375 CCDC11P1-201ENST00000503137 1162 ntBASIC5.87□□□□□ -1.47
TNFP01375 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 GAPDHP71-201ENST00000511530 1003 ntBASIC5.87□□□□□ -1.47
TNFP01375 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 AC006530.1-201ENST00000555980 571 ntBASIC5.87□□□□□ -1.47
TNFP01375 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 MRPS21P9-201ENST00000571150 257 ntBASIC5.87□□□□□ -1.47
TNFP01375 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 AC011445.2-201ENST00000599274 173 ntBASIC5.87□□□□□ -1.47
TNFP01375 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.87□□□□□ -1.47
TNFP01375 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.87□□□□□ -1.47
TNFP01375 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 PDZK1P1-202ENST00000425209 1350 ntBASIC5.87□□□□□ -1.47
TNFP01375 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TNFP01375 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.87□□□□□ -1.47
TNFP01375 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TNFP01375 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.86□□□□□ -1.47
TNFP01375 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 PARP4P2-201ENST00000446672 3326 ntBASIC5.86□□□□□ -1.47
TNFP01375 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
TNFP01375 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TNFP01375 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.86□□□□□ -1.47
TNFP01375 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
TNFP01375 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms