Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL138878.2-201ENST00000440581 1241 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AL356121.1-201ENST00000442911 156 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC023512.1-201ENST00000444513 499 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXA3O43365 MED28P7-201ENST00000456611 530 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC079193.1-201ENST00000460497 588 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 RN7SL790P-201ENST00000474043 298 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC107398.1-201ENST00000486904 505 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC074386.1-206ENST00000487102 761 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXA3O43365 AC008967.1-201ENST00000504843 163 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 MTND5P13-201ENST00000513046 1079 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXA3O43365 RFPL1S-203ENST00000539579 330 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AL135978.1-201ENST00000553618 1266 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXA3O43365 HNRNPA1P71-201ENST00000559135 950 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXA3O43365 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXA3O43365 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXA3O43365 RN7SL178P-201ENST00000582930 304 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 RPS27AP19-201ENST00000597285 458 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 AC023513.1-201ENST00000604396 691 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXA3O43365 AC010608.2-201ENST00000624830 470 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXA3O43365 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HOXA3O43365 AC034111.1-201ENST00000562143 3770 ntBASIC5.77□□□□□ -1.49
HOXA3O43365 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
HOXA3O43365 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXA3O43365 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HOXA3O43365 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXA3O43365 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 NCOA4P2-201ENST00000340589 1813 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA3O43365 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 AC093536.2-201ENST00000565257 1406 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 AC093909.5-201ENST00000621839 1799 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HOXA3O43365 PPIAP22-201ENST00000358455 498 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 RNA5SP472-201ENST00000363868 119 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 RNU4-4P-201ENST00000364588 130 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HOXA3O43365 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC5.76□□□□□ -1.49
HOXA3O43365 MIR551B-201ENST00000384984 96 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 MIR152-201ENST00000385212 87 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL121978.1-201ENST00000402778 359 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL355379.1-201ENST00000405542 640 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA3O43365 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA3O43365 RAC1P8-201ENST00000427086 527 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 DLGAP5P1-201ENST00000430307 464 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AC010153.1-201ENST00000432862 727 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL022324.2-201ENST00000434827 780 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 EMC3-AS1-205ENST00000438698 534 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AC009518.3-201ENST00000438972 253 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 AL050341.1-201ENST00000447743 313 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AC009961.3-201ENST00000449832 765 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AURKAPS1-201ENST00000451805 1212 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 ANKRD26P4-201ENST00000455755 950 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 RPS7P11-201ENST00000484240 586 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA3O43365 GLYATL1P4-201ENST00000529326 906 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AP006587.5-201ENST00000532033 739 ntBASIC5.76□□□□□ -1.49
HOXA3O43365 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms