Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC10.23□□□□□ -0.77
CUX2O14529 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CUX2O14529 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC10.23□□□□□ -0.77
CUX2O14529 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX2O14529 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
CUX2O14529 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX2O14529 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX2O14529 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC10.22□□□□□ -0.77
CUX2O14529 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX2O14529 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC10.22□□□□□ -0.77
CUX2O14529 AC092324.1-201ENST00000468671 324 ntBASIC10.22□□□□□ -0.77
CUX2O14529 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC10.22□□□□□ -0.77
CUX2O14529 MRPS16P1-201ENST00000523462 412 ntBASIC10.22□□□□□ -0.77
CUX2O14529 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC10.22□□□□□ -0.77
CUX2O14529 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC10.22□□□□□ -0.77
CUX2O14529 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC10.22□□□□□ -0.77
CUX2O14529 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX2O14529 AC087283.1-201ENST00000604029 1074 ntBASIC10.22□□□□□ -0.77
CUX2O14529 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX2O14529 AC068831.8-201ENST00000620171 435 ntBASIC10.22□□□□□ -0.77
CUX2O14529 CD86-204ENST00000469710 1604 ntTSL 2 BASIC10.21□□□□□ -0.77
CUX2O14529 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC10.21□□□□□ -0.77
CUX2O14529 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CUX2O14529 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
CUX2O14529 LRRC37A9P-201ENST00000603850 5376 ntBASIC10.21□□□□□ -0.77
CUX2O14529 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CUX2O14529 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX2O14529 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC10.21□□□□□ -0.78
CUX2O14529 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CUX2O14529 AL050335.1-201ENST00000396909 869 ntBASIC10.21□□□□□ -0.78
CUX2O14529 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX2O14529 RN7SL205P-201ENST00000490174 284 ntBASIC10.21□□□□□ -0.78
CUX2O14529 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX2O14529 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX2O14529 PCNPP1-201ENST00000552501 511 ntBASIC10.21□□□□□ -0.78
CUX2O14529 RN7SL52P-201ENST00000584271 284 ntBASIC10.21□□□□□ -0.78
CUX2O14529 AC006116.3-201ENST00000592968 361 ntBASIC10.21□□□□□ -0.78
CUX2O14529 LAPTM4BP2-201ENST00000604542 446 ntBASIC10.21□□□□□ -0.78
CUX2O14529 RN7SL722P-201ENST00000617780 284 ntBASIC10.21□□□□□ -0.78
CUX2O14529 RN7SL565P-201ENST00000618246 284 ntBASIC10.21□□□□□ -0.78
CUX2O14529 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC10.21□□□□□ -0.78
CUX2O14529 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC10.21□□□□□ -0.78
CUX2O14529 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX2O14529 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
CUX2O14529 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC10.2□□□□□ -0.78
CUX2O14529 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 GUCY1B2-204ENST00000531898 1979 ntBASIC10.2□□□□□ -0.78
CUX2O14529 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX2O14529 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX2O14529 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 AL161747.1-201ENST00000480068 358 ntBASIC10.2□□□□□ -0.78
CUX2O14529 OARD1-211ENST00000480585 829 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX2O14529 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX2O14529 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX2O14529 BNIP3P33-201ENST00000598912 569 ntBASIC10.2□□□□□ -0.78
CUX2O14529 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC10.2□□□□□ -0.78
CUX2O14529 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
CUX2O14529 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX2O14529 AC131649.2-201ENST00000624925 4439 ntBASIC10.19□□□□□ -0.78
CUX2O14529 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
CUX2O14529 GABARAPL3-201ENST00000412799 354 ntBASIC10.19□□□□□ -0.78
CUX2O14529 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC10.19□□□□□ -0.78
CUX2O14529 PDCL3P4-201ENST00000489621 720 ntBASIC10.19□□□□□ -0.78
CUX2O14529 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 ARL1-211ENST00000551828 776 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC10.19□□□□□ -0.78
CUX2O14529 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 AC015818.6-201ENST00000584274 634 ntBASIC10.19□□□□□ -0.78
CUX2O14529 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC10.19□□□□□ -0.78
CUX2O14529 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC10.19□□□□□ -0.78
CUX2O14529 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 AC092821.3-202ENST00000641304 2767 ntBASIC10.19□□□□□ -0.78
CUX2O14529 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC10.19□□□□□ -0.78
CUX2O14529 MITF-203ENST00000328528 4680 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX2O14529 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX2O14529 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC10.18□□□□□ -0.78
CUX2O14529 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC10.18□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms